RnoINT0095739 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214805524-214805851:+
Coord C1 exon
chr1:214805524-214805702
Coord A exon
chr1:214805703-214805781
Coord C2 exon
chr1:214805782-214805851
Length
79 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
GACGCTTTCTGTGCCCACAGACT
3' ss Score
10.06
Exon sequences
Seq C1 exon
GGTCTTTGCCGAGTGCCACAAGTTCATCCCTCCAGACGCCTTCTTCAGAACCTGTGTCAGTGACCACTGCAATGGCAATTTTAGTAAAACGCTCTGTCAGAGCCTGGAGGTCTACGCAGCGCTCTGCCGGATCCAGGGTGTATGTACCGACTGGCGCAATGCCACAGGAGGGCTGTGTG
Seq A exon
GTAAGTTGGAATCATTCGACTTAGGGCTCCACCCTCCTCGGTTCTTGAACCTGTTTGATGACGCTTTCTGTGCCCACAG
Seq C2 exon
ACTTCTCCTGTCCACCCTCTAAGGAGTACAGGCCTTGTGGACCCATGTATCCAGCTTCCTGCAGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(81.1=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(35.7=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACGCCTTCTTCAGAACC
R:
GGCCTGTACTCCTTAGAGGGT
Band lengths:
182-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]