RnoINT0095744 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214806878-214807485:+
Coord C1 exon
chr1:214806878-214807058
Coord A exon
chr1:214807059-214807383
Coord C2 exon
chr1:214807384-214807485
Length
325 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
ACAGGGCTACCTCTCTACAGTTT
3' ss Score
5.33
Exon sequences
Seq C1 exon
CCTGGAGAACACTGGATCAGCAACTGCCAGGACTGTGTGTGTGACCTTGGCTCTGTGTCAGTACAATGTGAGCCGGTGAAGTGTGAGGGCCAGGACAAACCCCCACAGTGCACAGAAGCTGGCTTTGTGACTGTGACCTGGCCCAGCACTGACAATCCATGCTGCCCTGAGACACTGTGTG
Seq A exon
GTGAGCATCTCCTGGGGACATAGAAGAGTCACCCTCTAGCTTAGCTGCACTGGGCCATTCCAGGGGTGGGGGGTGATCTGAAGATGCTTCAGCTTTTTACCTAAAAATAAAACTGGCGACCTCTGGTCTGACCTAACAAAGCAGAAAATTGGCGAGGACCAAGGGGATCAGAAAGTGAGGGGATTTGTTGAAACCCAGAAAAGCCATGAAACACACTAGGTCCCAAGGGAAAAAATGACACTAGAGACCAGTGTTTCCAGAAATGAAGAAGGTGGGGGGTGTGTGGCTAAGTTGGCAGTGTCCTGACAGGGCTACCTCTCTACAG
Seq C2 exon
TTTGCAATTCAACCACTTGCCCGAGTCTGCCCAAATGTGAACCAGGGTACGAACTGCTCCAGACCCATGAGAACGGCAGCTGCTGTCCCATCTCCAGCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGAACACTGGATCAGC
R:
CAGCAGCTGCCGTTCTCATG
Band lengths:
266-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]