RnoINT0095880 @ rn6
Intron Retention
Gene
ENSRNOG00000017949 | Mvb12a
Description
multivesicular body subunit 12A [Source:RGD Symbol;Acc:735220]
Coordinates
chr16:19973636-19973955:+
Coord C1 exon
chr16:19973636-19973781
Coord A exon
chr16:19973782-19973856
Coord C2 exon
chr16:19973857-19973955
Length
75 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CTGACCTGTGCGACCCGCAGATC
3' ss Score
9.21
Exon sequences
Seq C1 exon
GTTGTAGTCCGAGGTTCCGGACCCTCCGAGGGCGTTAGCTGCCTTTTGAACTCCCAGGGAGGATGGATCCCGGGACGGATTCAACGCCGCTTGCCGCCCTGGTTTGGTCGTCCGCCTCGGCGCCGCCGCCGCCGGGTTTCAGCGCG
Seq A exon
GTGAGTAGGGGCGTTCAAGGGCTGCGGGGATGGGCCAGGAAGGGGACGAAGCCCGCTGACCTGTGCGACCCGCAG
Seq C2 exon
ATCACCTGTACCGTGGAGGGCGCGACGGCCAGCTTCGGCCGAGGCTTCGCGCAGAAGGCCGGCTACTTCCTGTGCCTGAGCACACTGGGTATCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017949:ENSRNOT00000024413:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=PU(22.0=71.4)
A:
NA
C2:
PF102404=DUF2464=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTTTTGAACTCCCAGGG
R:
AGGAAGTAGCCGGCCTTCTG
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]