RnoINT0095882 @ rn6
Intron Retention
Gene
ENSRNOG00000017949 | Mvb12a
Description
multivesicular body subunit 12A [Source:RGD Symbol;Acc:735220]
Coordinates
chr16:19974090-19976009:+
Coord C1 exon
chr16:19974090-19974186
Coord A exon
chr16:19974187-19975882
Coord C2 exon
chr16:19975883-19976009
Length
1696 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGA
5' ss Score
5.9
3' ss Seq
CTCTCTGCCCCCACTCCCAGGGA
3' ss Score
10.02
Exon sequences
Seq C1 exon
AACCCTCAGGACAATGTGGTAGTGGACATGCAGATCGTGATGGACAAGGGGCCCCTGCCACCAGGCTTCTCTACAGTCAACGACCCTCAGGATGCCA
Seq A exon
GTAAGATCCGCGGGCACGGGAGAGTGACAAACACAGGGAAGGGCGGGCTGGTATCTGTCTGGAATTGGACCTAGCTGGGCAGGGAGGTACAACCTGTAAATGCAAGCTGAAGCAGAAAGATGGTGGGGAGTTCAGGGCCAGCCTGGGCTACAGAGTGAGGCCTTGTCTCAACCACTACTCCAAAATTAAATAGTTGATACATACCTGTCTTAGTACTCAGGCTGAGGCAGGAGGATGGCTCTGATTTAGTGTCCAGCCTGGGCTACAGAATGAGACCTTGCCTCGGCTTTTCCTAAGAATTAAGCTTAGTGGGACACACCTGTCACTAGCCTGGGCTACATGAAATCCTGCCCCTAAACAAACAACAACCCCAGATGTCTCTGGCATACCCACCCGTCTTCCTCACTGACACTGGTCACCACTGCTTGCCCCCTGCTTCTGTGGCGGAGCGAGTCCTCCTGGCCATTCTCTTTTCCTTTCCAGGCTCTTGCACAGCGAGTCCACCTGGAGCTGGCTTTCCCTGCTCTCTGCATAGCTCAGCCTTCCCTCTCCCTTCTCCCCTGCCTGACCCAGCTGCCCGCCTCCCCGATGGTGCTTGGTTCTCTCGGTGTCTTTAGTGACGGCTGGCAGGCTGCCGTGCAGAGGGTCAGGTCAGTGTGCAGACAGAGGAGGCTTCCACAAATTCTATCCTTTTGCAGCTGTCTCTTGACTTAGCATTTAATTGGTTTGGGGGGGACAGGGTCTCAGTGTGTAGCCCCAGCTGGCCTGGAGCTTCAGTCCTCTCCTCCAGGATTCATGGGCCATCATGACCAGTCCCTTATAATCTGCACGGTGTGGGGGCTGCTGTTCTTCATCCTAGCACCTAAGAGTCTGAGGCAGGAGGATTGTTTCCAATTCAAAGTTATTTTGGGCTATGGGGTGAACTCCAGGGCAGCATCCACTACAGGGTAAGGTTCTGTCAAAGAAAGCCAGGGCCGAGCATTAGTTGAGGTAGCAGAGTTCTCACCGTGTGCACAAAGCCCGGTTCCACCCTCAGCACCACACCAACAGACTCCAGAGGTTGAAACAGTGTTGCGCATTTAGGGTCCTTCTCGGCTACATAGTGTTTTTGAGGTCAGCCTGGGCTACATGAGCTGTCTCACAAACACAAATACACATAATAGAAAATAGCCCTGGTGTCCTCATAGAGCACACGTTAGGTTGAATTTTTTTTTCTTTTTTTCTTTTTTTTTTTTTTTAAAGATTTATTTATTTATTATATATAAGTACACTGTAGCTGTCTTCAGATACACCAGAAGAGGGCATCAGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATGACCTCTGGAAGAGCAGTCGGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCTGAATTTTTTTTTCTTTTAAAGCGGGGTTCTGTGATGCCTTGGGGTATCGAACCAGGGAAAGTGAGGCTGGGGTGCTAAAACAGATTCGCCACTGTTGACTCCATAGTCCCCCTCGAATATTTATGTCAAAAGTCAACCTGTTTCACTGATTCCCAAAAGTGATCTCCCCTACAAGTCTACCATTCATGATTTAGCCAGCTCCCTGGTGTGGTCCCTAACAGTACTGGTGAGCATCTTCCCGTCCATCCACTCCCCACTCACTCTCTGCCCCCACTCCCAG
Seq C2 exon
GGACCTCTGTGTCCAAGAAGAAGCGCATGTGTGTGAAGCTGATGCCCCTGGGGACGGCAGACGTGGTAGTGAGTGACGTGAAGCTCAGTGGGAAAACCAAGACCGTGCCTGGGTATCTGCGAGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017949:ENSRNOT00000024413:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.621 A=NA C2=0.116
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.7=100)
A:
NA
C2:
PF102404=DUF2464=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCAGGACAATGTGGTAGT
R:
CCCACTCGCAGATACCCAGG
Band lengths:
223-1919
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]