RnoINT0096283 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53730698-53731964:+
Coord C1 exon
chr10:53730698-53730893
Coord A exon
chr10:53730894-53731845
Coord C2 exon
chr10:53731846-53731964
Length
952 bp
Sequences
Splice sites
5' ss Seq
CCGGTAATT
5' ss Score
6.28
3' ss Seq
CTGGTTCTTCCGTTTCCCAGGTG
3' ss Score
10.18
Exon sequences
Seq C1 exon
GCTATTCATTCTCTCCAGGCTTTGTCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGGGAAACCTAGAGAAGATGTGCCGCACCCTGGAGGACCAGGTGAGTGAGCTGAAGTCGAAGGAGGAGGAACAACAGCGCCTGATCAACGACCTGACCACCCAGAGAGGACGCCTGCAGACCGAATCCG
Seq A exon
GTAATTCTCCATCTCCAATGCTGTTCGAGCATAGAGATGAGGTAGTTAAGAACAAATGTGCTGCTGATGTGAGCATCTAATATAAGCAGCTAAGAACACCGGTGATTCACCAGAAGCCTCAGGCTCAGCCTACATTCAAAGTCGTGACAGGTTCAAGCCCTGTTCCAGAAAGGCCTTGAGGATCTATCCATAGAGGAAGTACTGAGATCAGGAGACACTCTAGCATGATCCCCGGGTTTCTGTCTTAGCTCACATTTTTTTTTTTTTTGTTGTTGCCGTTCCTATTTTGCAGTACAGGTGATCAAACCCAGGGCCTCTCATATGCTAAACAAGTAGTCTGTGTTGAAGTTGTACCCCCCAGCCCTTCAGGTCCTTTTGTTTATGCCAGCATGAACTAATCCTCTGAACCAGGCAATGCACAGGCCCATCTCTCCATTGTCCTTGGAAGGTCCTCAAGATGACTCACTGGGCAACATCTCAAGGGCCTGGAGGGCTGAGTTCAAACTGTAGAACCCACAGAAAGTGGGGGAAGAAGCTCCAAAGACTTGTCCCCTTTCACAAGTATACTGTAGCAATCACACACCTGCACGCACACACACACACACACACACACACACACACACACACACGACGCATGCACACATGTCTGCGGAAGCAGATATTTTAGGTCCTCATTTTGACAGTCAACACTAGATTTTACATAATGTCATATAACTAAGATTTCACTCTGAGGAGAGAAAAGGAATTTACACTGTATTTATTCCTCTGGGTTGCTATGCAAGTTTTATTAGAAAACCTAGAGATTTTTGCACAGAGCCTGAAAATGTCAGTAGATAATTTAATCATCCGAACTCTCAACCTGGGGTGCTGAGAGTTAAACTTGCTTCTAAAATGAGTTTCAGAGTTTGTTCTTTATTTAGAGAACAGTAGTTCTGGTTCTTCCGTTTCCCAG
Seq C2 exon
GTGAATTTTCCCGGCAGCTTGATGAGAAGGAAGCGCTGGTTTCTCAGTTATCAAGGGGCAAGCAAGCATTTACCCAACAGATTGAGGAGCTGAAGAGGCAGCTGGAAGAGGAAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATTCATTCTCTCCAGGCT
R:
TACTTCCTCTTCCAGCTGCCT
Band lengths:
312-1264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]