RnoINT0096298 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53717235-53717932:+
Coord C1 exon
chr10:53717235-53717327
Coord A exon
chr10:53717328-53717868
Coord C2 exon
chr10:53717869-53717932
Length
541 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
ATGTCAGTTTTCCTCTTAAGGGT
3' ss Score
7.05
Exon sequences
Seq C1 exon
GGGACCCTGGAAGATCAAATCATCAGTGCCAACCCTCTGCTGGAGGCCTTTGGGAATGCCAAGACCGTGAGGAATGACAACTCCTCTCGCTTT
Seq A exon
GTGAGTCTCTTGTACACTGTGATGGGCACTGTCCATTGGCCCGAATCTGTGGGAAGTCTCTGATGTAGTCTTTGAATCTTTGTTCACATTATATTATACTGTGGTTTTCTTTGACTTATTTCAAAGATCAAAAACTCTAGCCAGAAGGACATGTGACTCCTTTCTGGAGTATTTTACTACAACAACAACAACAACAACAACTACTACTACTACTACTGCAAAATACTTTATCCTTAGTTTTAATTAATAATAACTGCATATATTTATGGGACACAATGGGATGTTAATATATTTATACATTATGGAATAATTAATCCAAGCTAATTAGCACAGCATCACCTCATATATTTATATTCATAAATTCTCAAATCCAAGATAAAATCCTTCTACTTGTAAAATGGAAGATAGACATTTTATTTCAGTTATAAATAGTCTCTGGCTTGATTTAAAATTAAAGCAGTATTGTTCCAAGTGTTTTTGAGCATTTTCAATTGCTTGCTACTCTTGAAAACAAAGTAGACATGTCAGTTTTCCTCTTAAG
Seq C2 exon
GGTAAATTCATCAGGATTCACTTTGGCACCACGGGGAAACTGGCATCCGCTGACATCGAGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]