RnoINT0096301 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53718868-53719544:+
Coord C1 exon
chr10:53718868-53718971
Coord A exon
chr10:53718972-53719405
Coord C2 exon
chr10:53719406-53719544
Length
434 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
ATCTTGATTTTTGTTGGCAGAGT
3' ss Score
6.21
Exon sequences
Seq C1 exon
AAATGCTGCTGATCACCACAAACCCATACGATTACCCATTCGTCAGTCAAGGGGAGATCAGTGTGGCCAGCATTGATGACCAGGAAGAACTGATGGCCACGGAT
Seq A exon
GTAAGTAGAACAAAGATCCAATATTTAGGATTACTGCTCAGGGTCAGAGATGTGGCTCACTAACTGTTTCGAGCCTTTGGAAGAAACCACTAAGAGCGGAGGGTGTTAAGAAAAACTGCCTCCCTGGACCCATATGCTGTCCCTCCACGGGCTTTTAAGATTCATCACCTCAGAGTTTGCAGAGGTCTTTGATGAAGCTGAGGTGTGACTTCTCAGAAATAATAAGTGTCTGAGGTTTACAATGTTTTCTCCTAAGCTTCCTTCTGACATGTGAGAAGACATAAACCTATGACTTCATTGCTCTTTAGCCCCCATTAAAGAACTCCTTTCCCTCTAGAAGTTCTGGTGTAATTTCCTCAGCTTGAGGAATGGGAACATGAGCTGTATGTAGAGGGTCATAACCTAACAGCTATCATCTTGATTTTTGTTGGCAG
Seq C2 exon
AGTGCTATTGACATTCTGGGCTTTACAAATGATGAAAAGGTCTCCATCTATAAGCTCACGGGAGCTGTGATGCATTATGGGAACATGAAGTTCAAGCAGAAGCAGCGGGAAGAACAGGCTGAGCCGGATGGCACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.277
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGATCACCACAAACCCA
R:
CTCAGCCTGTTCTTCCCGCT
Band lengths:
222-656
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]