RnoINT0096443 @ rn6
Intron Retention
Gene
ENSRNOG00000061038 | Myh15
Description
myosin, heavy chain 15 [Source:RGD Symbol;Acc:1565858]
Coordinates
chr11:54251942-54259047:-
Coord C1 exon
chr11:54258658-54259047
Coord A exon
chr11:54252069-54258657
Coord C2 exon
chr11:54251942-54252068
Length
6589 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
3' ss Seq
CCTTCTTTTGCAACTCACAGGCA
3' ss Score
7.68
Exon sequences
Seq C1 exon
ACTCAAATATTAAATTTGAAGGAGGAGCTGGAAAGCGAAAGGACCATTAGAGCCAAGGTGGAAAGAGAGAGAGGTGACCTCGCTCAAGACCTAGAAGATTTGAATGAGAGGCTGGAGGAGGCAGGGGGGACCAGTTTGGCTCAGATGGAGATAACTAGGCAACAGGAAGCAAGATTTCAGAAGCTTCGCCATGACATGGAAGAGACCACACGACACTTTGAGGCAACTTCTGTCTCTCTGAAAAGGAGACATGCAGAGAACGTGGCTGAGCTTGAGGGCCAGGTAGAACATTTACAGCAGGTCAGGCAAGTGCTCGATCAAGAGAAGAGTGACCTGCAGCTTCAAGTGGATGACCTCCTGACACGTGTTGATCAGATGGCCAGAGCTAAG
Seq A exon
GTAGACACGTCTAAACTTTCCTTACAGACATCGCGACACGGAAGTAGCAGAGGAGGGAAAGGCAGAGAAAAATCAGATTAATTGAAAATGTTTACTAATGGATAGTGTAAGTTTTTCCTTCGCAGTATTGAAGGGATTAAACATGCCTGCTTCACAGGATGATAGCCCCAGCCACCTTGGGATAGCTAAACTTTGAGACAGGGTCTCGTCAAGTTGCCTAGAATGGACTGTAGCTCAGAAGGGCTTTGAAATTGCAACTGGCCTGAAGTCATGGTTGCCCGGGCAACTCTCCTAGCCATTCCAAATTATAGAGAATCAAAATTTTCAGCTGTAGCAAAGCTCCTACTGTCCTGTCTGAACTTCAAAGCTCTTCAAAACACACTTTTAATTTAAGGTGGGATATATCAACATTCGCATAGTTCTTGTATTGTGGTCCTATATAGTTAATAACGTGTGGATGTCATCAAAGAGTGCATGTTGAATTGTTGGTCTGAGCCACATATGGGATGGCAGGAGAGAAAAGCATTGGCATGCAGGCAACAGGCACTCAGAATATCCCCCAGCAGTGAGTCCTGAAGTCCAATATGCAATATAGGCTTCCTCTTTGAACTGCTTGGCACTGGAGGTCTTCACATTTCTGGACTTGTAGATGAAGCAACAAATATGAGGGCAATGTAATAGCTATTCTAATTGGTCATACAATGAAATATGCTTATATTCATGAACACGATGGTTCCTGAAAGCTAGCAAATATATAAACAAATGAAGAATTTGTTCATCTTTAGAAGCCGCTGAAAAGATCAGATAACTGCTGGTTGCAACTCAAATTGCAATAAAACATTCATGCTATTTTTTCTCTCCAAGTGGGATGTGTGTACAGCTAATCACCTGCTCATTCCGTACATCCCTTCGACCTAACTTTATTTCCCCAGCCTTTTCTGGAAGTGTTCTCTTAAGTGGTTCTCTCAAAGATCCCTAATGGCCTTATTTTCAACAAATCGGCACGTGTAAAACCAAGCCCACCACCTTCACCTGCAGTAGGGCGTTCATTCCCTTTGTGCATTTCTGCCTCCGGCATCCAGTTCTTCCAACCAGCCTGGCTCTGTGCCTCAATCGCTTGCTTCTTCTGCCTTCTTTGTTTTCCATGTCATGACTGCAACAAGTCAACGCTTCATTGTCTTTCTGCCCCACCCCCACCCCTGCCCCATTCTCACGTTGGTCTCTCTTACCTTGCAGCTGGACTATTTTGGTTCCCTAAATTATTGTTTTTGTTTTAATATTTTACTATTCCAATCCATCCTATACAGTATCTATATCATTCTTTTCTAAACTATGAATTTACGGAATTATACCTCCACTGACAGATGAACACCACCTATCTGCTTTCAGAGTAAAACATGGACTCCGTTGCCACCAGTTCTAGATTTCACTAATTTGAGTTATTTTCATTTAAATATAAAGGTTTGTCTTTCACCAAAGTATCACTTTTCTCATCATATTCTCTCTCTCCCTCTTCTTCTCCCTCTCTCCCTCTTTATTTTGTTTTCATTTTGTTTTGAGATGGGCTCTCATCATGTAACTGGCTGGCCTGAAACTCATTTACTCACTATGTAGACCAGGCCTTGAACTCATAGGGATCCACCTGCCTCAGCCTCCCAAGTACTTTGATTAAAAGTGTGTGCCACCTCACCCAGCCATCAGTTTTTCTACATTAATTTCTTCTCTGGAATACTCAAATTCTTTTTTCTGTTTTAAAATCTTCCCTGTTCTAGAAATCTAGTCGCACTTTGGGAATCTTTCCTGCACTGTTGTAATTCAAAGTTTTTTAAACATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTTGAAGTCTTTATTGAACCAATTGCATGTTAGGTTACAAAGCTATTTCACTTTTCCAAAATGCTGTTTCTCTTTGTAGACCAATCTGGCCACAAAAGGCTACCTGGCTAAGTATTAGCCAGAAACTTCTAAATCCCAGTGTGATCTTCTTGTGGCATTTTTCCAACAAATAATGCAGACCAAATCACAAGATGGCCACCTCACTGGTCACATGGTCCTTAGGTTAATGAGCAGAGGCTGACAGGCTGTCTCCTCACTCTTCCAAGAACCGCCCCCAAGTGCACACTGCAGAAGGAAAGTTTGTTTTGAATACCACAGGACAGAAGGACAGGCAGCTCATAACTCCAGTGGAAAAACATATAGGAGAGCTGAGTGGCAACAGCAGGCACTGTGATAACCTGGGCTGTCAAAGTCTCTCCGTTACTCTGGCATGCAGTTTTTAAACATTCTTAAAGAAAAGCTTCTCTAAAGCAGAAACTAAGTCTTTTTTTTTTAATTTCAAATGTTATTCCCCTTCAGTTTCCCCTCCACTAGGCCCTCTTCCCTCCCTGCTGCCTCTATGAGGGTGCTCCCCCACTCCTGCCTCAGTAGCCTTGCGTGAAACTAAGTCTTATTTTGTTCATATTTACAATGATTTGTACACTCTCTGCAGTCGCTGGCATTAGCATCCACATATGCCTTTTGCTCAAAGTGTCACATTTAGGCAGAAGAGATTGGCTTCATCTCCTAATTAGATGCACACAAGCACATGGCCACATTCTTTTGATGCTTTGACTAGTTTTGATAATACATATTGATTCTGGGGCTGACAAAATGGCTCTCTAGGTAAAGGTGCTTGCTGCCAATCCTGGTGACTTGAGTACAGTCTCTGGGGCCCACATACTGGAAGAAGAGAACTGACGCCGGCAAGCTGTTCTCTGACCTCCAGATGACTTCTGTGGCAGTTGTGCCTATGTGTGCACACAGGCATGTACACACACACATGCATGTACACACATGCATGTACACACACTCACACATACATGTACATACACAATTTAAATTGTGTTCACTCTTAAAGGCATAAATATTATGCTGAACTTTTATCTGAGTTGTTTTCCTAAGTTATAATAGAAAGACTGGCATTGCTCAAAGGAGGCTAAAGCATTTTCAAATTCCGATAGAGAGCCCCGGGGCAATTGAGATGTGATAAAAAATTCTCACACAGCACCAGATCCGGGCTACCCTTCAACAAGATCTATGTCTAGCACCAGTTTCCAGGTTATTTCCCAACAAGCCCGCCCCTGACACTTCACTTCCTAGCAACCACCAATCAGGAGAAAAGCAGAAGTGAAGTTTATGGTTTGGCTCCCAGCACCAGCCAATTATGTTAAAGGCCATAATGCATCCGCAATGAGATGTGTACCACCCCCTTCTTGCCTCTATAAATGCTTTCCTGAAACTGTTCCCTCCCGTTCTCCTGCATCAGAGACAGTGTCGCGGCTCAAGCTCCAGCTTGAATAAAGAGACCCTAATGCGATTGCATGGGGGGAGAAAAGGAGAATTAAGATGAACGTGCGTCCCATTAGCTTCTTCTTTCTCCAAATCAAAATGTATTATTTGTCTTTAGGTTTTAATTGAAGTTCTTTTCAAGCTGTAATTCTTTTGCAAGATATATTTCTGTGCAGGCAACTATTAGATACACATCCATACGGTCTATTGCAAATCCTGATTATAAAGCGCTTTATTAATTAAAATACCACACTACTCACAGGTACCCAGCATGTGAAGCTGTGCCTAAAGGAAACAGGTTTTTGTCTTCCCAGGTGGGTTGATAACTTGCAAGTAGGTACAGCTCAGCAATATGTCATCACAGGATGTTTCCTAAAACACTACCACACTGTGGCTCATTTTCTTGCCTTTCCCAGTGAGGTATCATTTATTCATTTATATATATATATATATATATATATATATATATATATACATACACATATATATGTGTGTGTGTATATGTATATATATGTATTGTGTATATATGCATATATATGTGTATATATGTGTATATATGCATATGTGTATATATGTGTATGTATATTCTATGTATGTATAAAGTCATCTTTTACTCCTTTAAGACAGATATATAATGCAGTATACCTCAAGGTATGACCAGAAGTGCATCTTACAACCCTCTATGCTCTTCTTAAAAGCATAATATCTTTCATACTCAGTAATATCTTATTTCTCACAAATCAGCACATATAAATCCAAATCCACCACCTCCTCCTGAAGCAGATGTTTCCCTTGGCACTTCTTTCTCTCTGGAACCTGCTTCTTTCCTGGTCCCTTATTTGGTTAGAGTAATTTCTCATTGGAGATTTAAAATAGTTTATATGGTAAAGCATTTATCTGGTCTTCTAAGTGACCCAGACTTTGGACAGCCTGTATCAATTAGTACATCTAGTGATTTAATATTTAACATCGCCTTTATGATTAGTTCTTCATATGATAGATGCCTAAGAATTCAATATTTTATGTTTTCTTTCTAATTATATTCACACAGACGATTTTAGTTCAAATCTGACACTTACCCTTCTGAATGTGGGCAGGATATTAAGCCTCTGGGATACTGTTTTTTTTTTCATAAAATAAAGCCGTCTTCAACTTCTGAGGGATATCGTGAGGAAAGAAACAATGCACCAACTGTAATTATCAAAATCACTTTTGAATATGAGAGGAAAATGTTCCACATTTAAAAGACATTTTGTAATAGCAGGTGACCCCCAAATGGTTACATTAATCATGATTCCATCTTCTTTCATTGTTTGTGGTGTGTGGATAATTAAACACATCTGGCATTTAACATTAATGCTGTGGCTACCCTTATGCTGGTGGTATTGTATGAGAATCTGGTCATTGATTCTCTACCAGACTTGGCTTACCAATTACCAACAAGCCTGTGTAGATACTGTAGAGTATCCATAAGCTGGAACTTTATGGTATTCTCTGTCAGCCCCCCAATAGGCATGTGCTGGAATTCTCCTCCTCCTCCTCCTCTCCCTCCTCCTCCTCTTCCCTCCCCTCCCCTCTCTCCCCCTCCTCCTCCTCCTGCTCCTCTTCTTCCTGCTTCTTTGTCTTTGCTAATCTGGGGATGATATTCTATCATTGTAATAAAACCAATACTTGGAATCTATTTTATGAGGAAAGTTTAAATATGACCAGTAGATATACTAGTCAACCTCTTACTAAGCTCTACAATAGTTTAAATGTTTAGGCATGTGTTAAGTACCTATTTTATGCTAGGTATACATTTGGAGGTATAAGAGGGTACACGCTAGTAATTGGTTGTGGGAAGCTTAGACTACTCCTTAGCATAAGCTTAAAGAGAGCAATCTCCAACAAAACAGAAGCTCCAGCTACAAATGTCTAAGGGTTTTGTTGGCTCAGAAGTTTCCCACTGTTTTTTGGGCGCCTCGAGATTTGGCTGGTCTTAACCATTAGTAGTTCATAACAACTAAGCTAACATTGCAACCCTCAAGTTTACCGTCATCTTTCACCACCTCCCTGCGTCTCGGGGTTTCCTCAAATGCCAGAGTAAATCATCTCTCATCTCCTTATTTAATTTCTACAGTCCTCTCTCTTTAGAGAGATAATGCATTTCTGTGATTGTTACAGATTGAAATTTAACATAATATAAAGAGGCTATTGAACTTTACTGTACATTACTTTATTTAACTTCTACTCCAGCTATTTTTGCTGTTATTTACTGTCGTCAGTAGGTAAGGCAGAAGAGTTTCACAAAACAAAATAAAACAAAAGAACAACAAAACCCCACCATTTAAAGTGTATAGAACCATAGAGCACACCAACATAGTTTATCATTTTTAATCATATAAAGCATGAGAGTGTAAGCTGCAGTTACTTCTGAGGTAGTCACCACACTTCGATCTTGCATTTACTCCTCTCTGAGGGTCTTGAGAATTGAAATGACTTGCGTGAGTTTCCAGAATGTGACAAGAACATGGTGCCTGGATGTGATTAGACTTGTTACTTATATCAGGGAGGAGTAGAAAGGCTGATGTATTCCTTTGACTGAGCATGAAAAGCGAATTCAGAGAAGTTAGAGTTCGAAACTGCAATGTTAGCAGCATTGTCTTGAGCCTCAGCCCTCTTGATGAGAGGGTACAGGTCTTTACATGGATGTACTGAGCTATTGAAGCTCAGATCTGTCCAGGTTCTTCTCTTAACCCTGCTCACCCTACTAGATTTTCTTCTATGCCCTTCCCCTTCCTATCCATCCTTTTTTTCTTGCCTTTTCTCCTCTAATGCAGTTAAGTTTTATTCTAGGAAATCAATAATCTAAGAATGAGCAGAACATTTATCCCCAAGAAACACAGCTTATTGGAAGAGACAGATGAATATTTAATACAGTATCATTATATCATTATATCTGACACTACATTGCCGTGTGACATGCTGCCTTTTCTAGAAGACTGTAGAATTCTAGAGAGGCTCTGAGAATCCAGGGAGTTGGATTTGAGGACCAAGAAGCTTTGGGCTTTTCAAGGTGCTTAATTTAAAATATACATTTTCCTGATGCTGGCTGTGGTCTTTACTCCAGAAGCAGAAGTCATATAGGTCTTGCAGAAAGCATTGCCATCCTTCCTATGTAGCTGATTTATTGTGGCCCTTCTATGCCAAGACTAACCCTTCTTTTGCAACTCACAG
Seq C2 exon
GCAAATGCTGAGAAACTCTGTGGTCTGTATGAGAGGCGCCTGAATGAAGCAAACACAAAACTGGATGAGGCGACTCAGTTAGCAAAGGATCTGACGTCACAGAGGACAAAGCTTCAGAACGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061038:ENSRNOT00000090307:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.515 A=NA C2=0.419
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]