RnoINT0097300 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82215285-82216708:+
Coord C1 exon
chr8:82215285-82215371
Coord A exon
chr8:82215372-82216596
Coord C2 exon
chr8:82216597-82216708
Length
1225 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GCTTCTCCCCGACTTTTCAGGTG
3' ss Score
9.93
Exon sequences
Seq C1 exon
GTTTGACTCTAAACGGATTGTCCAGCAGCTGCGAGCCTGTGGTGTTTTAGAAACGATTCGAATAAGTGCCCAGAGCTACCCTTCCAG
Seq A exon
GTAGGCTGTTGTGAGTGAAGGCACAGAGAAGCCACCAAAGGGGACCACACCCATTGGTAGAAAGTTTATTCAGGGGGAATCAAACTGGTGTTGTGTGTGGTGTGTTTGGGGAATCAAACGAGTGTGTGCGTGCATGTGTGTGGTACATGGGAGGTGGGTGTGAACCAAAATCCCTGGGGGCTAGTGTGGGGGACTTTTATCTGTTGCAGACTTGGTTGAGTTAAACAGGAACTGGATGCCCTTTGTGGGAGGTGGCTAACTGTAGGGGGCCGATAAGGGAAGTAAAGACTTTTCCTAACAGAAAGCTGCTTCACAAGATTTCTGAGGAACACTGAGTTTAAGTTTTTGTCTACCCAGTAACTGGTAGCCATCCTTTTCTTTCCCCAATCAGAGTCCAGACTGAGCTGAACCAAGGCTGTCCTTTGGGACGCCATCAATGGCACTGCCTTTTAGGGGTCCACTTCGGACCTAACATTTGTCAGTCCTTGTTCAAGTGTTTGCTGAGAACAGAGGGTGCAGTGGCAATATTTTTTTGCATGCTTTGCATTTTGCAAAGTGCATTATCCTGGGAGAGGGACAGGTGATGAAATTCCCAAGGATGAGTTTATTTTGGCTTATGGTGTCAAAGGTGTCAATGGCCGTTTGGCTCTGTTGCTCCTGGGCACATCACTGACCGCAGTAGGCAGTCAGAGGGATAAGAAGGGGCCAGTTGACAAAGCCGTACCCACAGTGAGCTTCTGCATCCAGCTCAGCCCTTATCTCCTTCCTGGTTTCTGCCCACTCTCCGATAGCATCTAATTCAGCCCCCATCCCTGGGCTAAGCCATGACTTAGGCCAGAACCCTCACGATTCAGTGTTTTTCAAGAGTCTCACCTCTGAGCACTGCACTAAGGACCTAGCCTTACACATCCGAGTCTTTGGGACATATGTAATATCCAAACTGTGACACAAGTGCTGTGTATCTCAGAAGATACCAGCACCCCAGGCCCCCATCTCAGCTGCCTTGTCAGAACAGGAGCTGAGGAGGTCAGAGGGATGGGGGATAGGCTAAGTCCGTTCATAGAGAAGGTGCGAGTGCTGGGTGGTCTTGGTGGTGACACAGAGAGGGTCACCAGAGCCCACTCCACCATGTCCCCTGTGGGAGGGGGCTGAGGGAAGCAGCGCAGTCTACTGCACGAAGAGCCTCCTCCCTGACACACCTGCCTGCTTCTCCCCGACTTTTCAG
Seq C2 exon
GTGGACATACCTCGAGTTCTACAGTCGCTACGGTGTCCTCATGACCCAGCAGGAGCTGTCCCTCAGTGATAAGAAGGAGGTTTGCAAAGTGGTTTTGCACAGGCTCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGACTCTAAACGGATTGTCCA
R:
TGGATGAGCCTGTGCAAAACC
Band lengths:
198-1423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]