RnoINT0097301 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82216597-82217466:+
Coord C1 exon
chr8:82216597-82216708
Coord A exon
chr8:82216709-82217254
Coord C2 exon
chr8:82217255-82217466
Length
546 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ATATCTCTCTTCTCTTCCAGGAT
3' ss Score
12.3
Exon sequences
Seq C1 exon
GTGGACATACCTCGAGTTCTACAGTCGCTACGGTGTCCTCATGACCCAGCAGGAGCTGTCCCTCAGTGATAAGAAGGAGGTTTGCAAAGTGGTTTTGCACAGGCTCATCCAG
Seq A exon
GTGGGTCTCACCTGCTGGGCTCTTCCCGGCGGTATGCCTCTCAAACGTATCCCTTCCTGCCAGTAAGATAATGGCAGTCATGGCCCCTGAGGTAAGAGCCCTTAACAGCAGGCATCTCCTGTGGAGATCCAAACCCTGGATTCTGCAGCCATCCTCCTGGGATCCAATACCGTCTGACAGGACATGGTCAGATGAGGTGGAACCAGCTCCACAAGGTGGTCGTGTTGCTCAGCATGAATTGAGATTATCGCTGAGGTGATGAGTTAGGCCAGAGAGGAGATGACAAGCTATGACCGTGGGGACATGGAATAGGGGTGTGACGATGGCAAGCTACGATGGCTAGGAAATGGGACAGAGACTTGAACCCAAAACCAGGACAGAAAGCAATATGCACCTTGAATAGATGTTTCTAGATTATGATTCTGGTTTTTTTCCCCCCTGCCTTGTACATAAGCAACACCAATGATTTGAGAATCATTTGACTCTCTCAAATTGCAAAAAAAAAAAAAATCTTTATTTTGTAGTTATATCTCTCTTCTCTTCCAG
Seq C2 exon
GATTCTAACCAGTACCAGTTTGGCAGAACCAAGATTTTCTTCAGAGCAGGACAAGTGGCTTATTTAGAGAAACTCCGCTTGGATAAACTGAGGCAGGGCTGTATTGTGATCCAAAAGCATGTGCGTGGCTGGCTGCAGAGGAAGAAGTTCCTCCGAGAGAGACGAGCTGCCCTGACAATCCAGCAGTACTTCCGGGGCCAGCAGACAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.5=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(2.1=19.7),PF0061222=IQ=WD(100=29.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCTCGAGTTCTACAGTCGCT
R:
CTCACTGTCTGCTGGCCCC
Band lengths:
318-864
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]