RnoINT0099890 @ rn6
Intron Retention
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37742296-37742646:-
Coord C1 exon
chr3:37742542-37742646
Coord A exon
chr3:37742404-37742541
Coord C2 exon
chr3:37742296-37742403
Length
138 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
GTATTTTCCTTTCTACCTAGAAA
3' ss Score
8.17
Exon sequences
Seq C1 exon
CATTTATACACAGAGGCTTGGGATGCTGACAAAGCCTCCATCCATGTCATGCCAGACACCCCTGAAATCCTGCTGGCCAAGAGCAATTCTGCCAATATCAGCCAA
Seq A exon
GTAAGAGATGCCCTTGGGTGTTGCTTAAGCCTTCATAGAAACTGTTAAAATAAATTTTCACCTTACTAGTGTCTTCTCTGAGAGTGGCCTACTGGGTTTCTAAACTCCATTTTCTGTTGTATTTTCCTTTCTACCTAG
Seq C2 exon
AAACTATATACCAAGGGATGGGACGAATCAAAGATGAAGGACTATGACCTGAGAGAGGATGCTATTTCCATCAAAAGTGCCAAGGCCTCCAGGGACATTGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783:ENSRNOT00000059461:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATACACAGAGGCTTGGGATGC
R:
ATCACTGGCAATGTCCCTGGA
Band lengths:
210-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]