RnoINT0099957 @ rn6
Intron Retention
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37680657-37681777:-
Coord C1 exon
chr3:37681664-37681777
Coord A exon
chr3:37680762-37681663
Coord C2 exon
chr3:37680657-37680761
Length
902 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TGTTGGGTGTCCTTTTACAGATT
3' ss Score
9.66
Exon sequences
Seq C1 exon
AAAGAATATAAGCGAGACCTAGAGCTGGAAGTCAAAGGAAGAGGCCTGAATGCCATGGCCAACGAGACTCCAGATTTTATGCGGGCCAGGAATGCTACCGACATTGCCAGCCAG
Seq A exon
GTCAGCGCTTCCGGGAAGGCACGCCTGTCCAAACGGTGGCCTTGGTTATAAGAATGTACTGTTGGTCCTCTGTCATCTCCCTTGTTTGACAGTGACATTATATATTTAGCATCCTTAACCATCTGCTTGATGAAACATAAAGCCCAGGAACCATTGTCAGGCTGCTTCTGTCTCTGCCTTCCTGAGTCTACAACCACTGCGGACATCAGATCAAAGTGCGGAAGCTGGAGGACCAAATTACTGTGTGGAACTGGGGCAGATTCTGACATTCTCGTATCTTAGTCAGTCCACTCCTTCTGTGGCACTAAGAATGCCTTCCTTAGACTGTGTTCTTTTTTTCCCCCTGCTTTGTAAACCTACATTTTAAACACATCCTTTCAGGCATCCAGTGTTGTCTGAGGCTCCCTAGTGTCTGGTCTTTATGTAAACCACCCCTACTCTCCTATCTATCTACCTGATTATCCCTTTGCCCATAGTCACCTACATCGATCTAATCGGACAGTCAGTCTTTCAACAGCCAAGACCTTGCTGAGTCTCATTCTTTAATATAAAACAATAAACACGGACAGGAAAGATGGTTCAAAAGCACTGGCTTCTCCTGTGGAGAGCCTACATCAGAACTGCAGCACCCTCCAATCAGCTCACTGCCCTGTATAAGCTCATCTTCAGGAGATCCCACATCTTCCTCTGGTCTCTGTAGGCAGCGGGGGTGCACATGACGCACAGACATACCTACAGGCACAACACCTACACATGCAAAAATTACTTTGAAAGGTATAAACACAATAGAAAGAGATGTATCGAGTGCCAGGAAAAAATATGATCGCCTCTTCATTCAACCAAGCTAAGAGGTGCTGTGCATATTGTAAGCGTTCACCGGACTGTTGGGTGTCCTTTTACAG
Seq C2 exon
ATTAAGTACAAGCAATCGGCAGAAATGGAAAAGGCCAATTTCACTTCTGTTGTTGATACCCCAGAAATTATCCATGCTCAGCAGGTCAAGAACCTCTCTAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783:ENSRNOT00000059461:97
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=NA C2=0.371
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=28.9),PF0088013=Nebulin=PU(55.2=42.1)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATAAGCGAGACCTAGAGCTGGA
R:
CTGGCTAGAGAGGTTCTTGAC
Band lengths:
214-1116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]