RnoINT0100573 @ rn6
Intron Retention
Gene
ENSRNOG00000012512 | Nexn
Description
nexilin (F actin binding protein) [Source:RGD Symbol;Acc:708354]
Coordinates
chr2:257459921-257461327:-
Coord C1 exon
chr2:257461130-257461327
Coord A exon
chr2:257460143-257461129
Coord C2 exon
chr2:257459921-257460142
Length
987 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
GAAATCTTATTCTTTTGAAGGAA
3' ss Score
7.3
Exon sequences
Seq C1 exon
GTATTAGATGATGATTCCCCAGAGATTTATAAAGCAGTCTCTCAAGAATCTCTAACGCCTGGAAAACTGGAAATTAATTTTGAACAATTATTAAGACAAAAAATGGAAGAAGAAAGACGACGAACAGAGGAAGAACGGAGGCAAAAACTAGAAATGGAGAAACAGGAATTTGAACAACTGAGACAAGAAATGGGAAAG
Seq A exon
GTAAAATGTAAGAATATTCACTTAGCGATCTGAGTATCTTCCTTATATTGCTTTAGTGTGACCTTTATGTACTGTTAATCATACTGTTAATCACATATGGATATCTGACATACTTTTATGACACGTATAGTTAGTATAGGCTACCATGTCTGACTTGGTAGAGTGTGGCAAGGAACGTGGCCCGATGTGATACTGAAAACGCATTTAAAACATTAAGATCCTTTACATGATTTATTTTCTATAACTAAATTGTTTCTCCTGTGTGAGCCTTGTAAGTAACTGTGTCCTAACACGTCAAAAGGAGAGTAGATCTGTTCTTCCAAAGAACGGAGACTCAATTCCCAGCACCCGTGGCTCCCAACTATCCATGAATTCCTGTTCCAGGGGATCTGATGCCCTATTCTAACCTGCACAGGGCATGCATGTGGCATACACACATCATGCAGCCAAAGAATTTATACGTGTAAAAATAGAAAATCTAAAAAAAAATTAAGTAACCAATACTGTATCTAATTGTGGGTAGCACAATAGTATTGATAGTAGCAATTAAATATGCCAAAGAGAAGCTGTACAAGGCTTTCTTTATGTGCAAGGTTGGAAGTTCTTAAGTAATGTTTTTAAATTTAGACTTATTTTCTGTGTATTCATCTTCTGCCTGTGTATATGCCTGGCACCATGAGCAAGCAGTGGGAGTGGAAGTCAAAGGAGAATGTCAGATCCCTGGAACTAGAGTTAAAGTTGGTAAGCCTTGATATGAATGCTGGGCACTGAACTCAAATTCTCTGAAAGATTAGCCAGTGCTCTTAACACTAAGCCATCTTTCTAGTCCCAGAAATAAAACTCTTAAAACAGTATATACATATGACTCCACTTGTCCTATGAGTTCCAGGCATCTGCTTGGTTCTACTTCCCCACACACAGAGATAAGAAGGGGCATTCATTGTAATCTGCTGATATTCAACATACGGAAATCTTATTCTTTTGAAG
Seq C2 exon
GAAGAAGAAGAAAATGAAAGCTTTGGGTTGAGTAGAGAATATGAAGAATTAATTAAATTAAAAAGGAGTGGTTCAATTCAAGCCAAAAATCTAAAAAGCAAGTTTGAAAAAATTGGACAGTTGTCTGAAAAAGAAGTACAGAAAAAGATAGAAGAAGAGAGAGCAAAAAGGAGAGCAATTGACCTTGAAATTAAAGAGCGAGAAGCAGAAAACTTCCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012512:ENSRNOT00000016967:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=NA C2=0.427
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCCTGGAAAACTGGAAATT
R:
AGTTTTCTGCTTCTCGCTCTT
Band lengths:
358-1345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]