RnoINT0102291 @ rn6
Intron Retention
Gene
ENSRNOG00000004346 | Notch3
Description
notch 3 [Source:RGD Symbol;Acc:620761]
Coordinates
chr7:14151974-14153464:-
Coord C1 exon
chr7:14153160-14153464
Coord A exon
chr7:14151992-14153159
Coord C2 exon
chr7:14151974-14151991
Length
1168 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCTCTTCTCGCTGTTGTTAGATT
3' ss Score
7.21
Exon sequences
Seq C1 exon
ATGGCTTCACCCCACTTATGCTGGCCTCGTTCTGTGGGGGAGCCCTGGAGCCGATGCCAGCTGAGGAGGATGAGGCCGATGACACGTCAGCCAGCATTATATCAGATCTGATCTGCCAAGGAGCCCAGCTCGGGGCACGAACTGACCGAACTGGCGAGACCGCCCTGCATTTGGCCGCCCGATATGCTCGAGCCGATGCGGCCAAGCGGCTACTGGATGCTGGGGCAGACACCAACGCCCAGGATCATTCTGGCCGCACCCCTCTGCACACCGCAGTGACAGCTGATGCCCAGGGTGTCTTCCAG
Seq A exon
GTGAGACAGGCCTGTCTCTTCAGACTGCAGAGCTGCTGGGTGGGGATCAGACACGCCTAGATTTGAGCCCTGGTCTGTCTTGCAAAGCTTGGCTGTTTGGAAATAGGAATATCTGGGGCACATTGCCTGTCAGGAATAGGTGGTGTCTCACCTCGATTTCTTTTTTCAGGACAGGGTTTCTCTGTGTAGCCCTGTCTGTTCTGGAACTCACGCCGTAGACCAGGCTGGTCTTGAACTCAGAGAGATCCATTTGCCTCTGCCTCGGAGTGCTGGATTAAAGGTGTCCACTACTAACACCTGGATTTTTTAAAATATCATTAAAATTACATTTATTTGGTGTGTGTGTGTGTGTGTGTGTATGTGTGTATGTGTGTGTATGTGTGCGTGTGTATGTGTGTATGTGTGTGTGTGATGTATGGTTTGTATGTGTGTGTGTGTTATGTTGTATGGTGTGTGTGTGTGTGATGTTGTATGGTTTGTATGTGTGTATGTGTGTGTATGTGTGTGTATGTGTGTATGTGTGTGTGTGATGTATGGTTTATATGTGTGTATGTGTGTCTGTGTGATGTTGTATGGTTTGTATGTGTGTATGTGTGTCTGTGTGATGTTGTATGGTTTTTATGTGTGTGTGTGTGTGTCTGTGTGTGATGTATGGTTTGTGTGTGTGTGTGTGTGTGTGTGGACNGCATGNNNNNNNNNTGTGTGTGCACTTGCCCATCATTCAGCTTGCAGAAGCCAGAGGAGGCTGTTGGATGTTCTGCTCCATTGTGCTCCACCTAATCTTTTGAGACAGAACCCATCAGGGAGGCTGGAGTTAGGCTGGTGACCAGCAAGCTCTCTTGATCCTCTTGTCTTCTCCCACACAGCCCTGGGGTTATAGGCACACATGGCCAAGTCTGGCTTTTTACATGGACTTTGGGCTCTGAAGTTAGGTGCTTGTCCCCTGAGCCATCTCCCGGGCCTTCCACACCATACTGTTATTTAAACCCATTTGGAATGAGCATATTTTTAATTTACCATGTGCTTAGCAGGAGCGACACCTCGTTTTAAGTCAGGAAATATCCGTAGCCCGTGGGTTCCAAAGCTGTGGTGTTTGGGGCCCTCAGGGTGCTGTACACGCCTCCCCCTTGGCATAATGTCCTGCCACGGCTCTTCTCGCTGTTGTTAG
Seq C2 exon
ATTCTCATCAGGAACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004346:ENSRNOT00000037456:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(83.5=74.5)
A:
NA
C2:
PF127962=Ank_2=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]