RnoINT0102972 @ rn6
Intron Retention
Gene
ENSRNOG00000050690 | Nr2e3
Description
nuclear receptor subfamily 2, group E, member 3 [Source:RGD Symbol;Acc:2318602]
Coordinates
chr8:64797518-64797929:-
Coord C1 exon
chr8:64797866-64797929
Coord A exon
chr8:64797625-64797865
Coord C2 exon
chr8:64797518-64797624
Length
241 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTG
5' ss Score
4.41
3' ss Seq
ACTGTTGCTGCTTCTCTCAGAAA
3' ss Score
7.55
Exon sequences
Seq C1 exon
TTCCGGCTTGGCAGTGACTCCACAGAGTTTGCCTGCCTGAAGGCCCTGGTCCTCTTCAAACCTG
Seq A exon
GTACTGAGCCTTCGCCCAAGCTTCCAAAGACATGGTTAGGAAGAAAGAGGGAAAAGCAGATTTATGGTCACTTCTGTCTGGCTGGGCTCCTCATAAACCCCACCCCCCGGGTATAGGGGACAGTCTTCTTTCTGGTGAGGGGAGCAGCAGAAGAGATGTGGCCTGACAACTATTCTGGGGTGTGGGTGAGGCCGACTTCTGGAAGGAGCTCAAGGGAGCTCACTGTTGCTGCTTCTCTCAG
Seq C2 exon
AAACACGAGGTCTGAAGGATCCTGATCATGTGGAGGCTTTGCAGGACCAGTCCCAGGTGATGCTTAAGCAGCCGCCAAGGCTCCCACCCAGTCAGCCTGTGAGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050690:ENSRNOT00000073122:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.714
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(13.7=100)
A:
NA
C2:
PF0010425=Hormone_recep=PD(15.7=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCAGTGACTCCACAGAG
R:
TCACCTCACAGGCTGACT
Band lengths:
165-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]