RnoINT0104359 @ rn6
Intron Retention
Gene
ENSRNOG00000023393 | Nup214
Description
nucleoporin 214 [Source:RGD Symbol;Acc:1304977]
Coordinates
chr3:11037092-11040827:+
Coord C1 exon
chr3:11037092-11037170
Coord A exon
chr3:11037171-11040739
Coord C2 exon
chr3:11040740-11040827
Length
3569 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CCTTATTTTGTCCATTTCAGGTC
3' ss Score
12.49
Exon sequences
Seq C1 exon
GGGTCTCTGATAAATTCCTTCAAGCCGTCAGGACCCACACCAGTGTCCTGTCAGCTGTCCTCTGGGGATAAAGCTGTAG
Seq A exon
GTGAGTCTCCCTGGCTGTATCATGAGAGTGAAGACGAAAGTGCTCCTGAGAGTTCTTGTGTAGATCTGCAACCAGTAGGTGGGAAGGCAGATGCCATATTCCAAAGGCCTCCACCATGAGGAATTGTGAGGAAACCCATAAGCCCGTTGACAGTTGCTAAAAGTTGAGGTTTAGACTGTAGGCTCAGCATGAGGAAACTTTGATGTTCTTTTTCTCAGAGAAGTAGTAGCAATATCGTTGTGCCTGCTGCATGCCGTTGTGTAGAGAGAAGCATGTGAGGCAGCTGACCACTCATCCCTCTTCTCAAAGGGAAAGAGCTCTCTTACCTCTTGACACCCTTGCAGGTATTCCTTTCCTCTCCCTTCATTTCCCTTCTTTTCCTCTTCCCTTCCCTTCCCTTCCCTCCCCCTTGAGGGGCGTGTCTCATATAGCTCAGGCATGACATACCACATTTGATATATGTAGCTACAGATGATAGTCTTGCCTCTGCCTTCCCAGTGCAAGGATTCTGTACATGTGCCAGGTGCCTGGGTTTAGAGAGCTCAGGGTTTTCTGTGCTCTGAGAAAATAACTCTTTCAACTGAGAACAGTCCCAGCCCCTTCACAATAACTATTTAAGAATCCGTAAATAGATAAAATACAGCATTCTTGTTACAGTGTAAGATCCTAGTAGGTAAGCTAATAATTCAAGGTTTTAGAGCTTCACAGACTTGCCAACTAACTCAAACATAAATATTTTTAATTAAGTTAGTTTTTACAGTAACTGGAGGTGTTTGGACCATAGTATAAATTGCCAAGGTTTGTGCTGTTCCTGATTGGATTGGCCAGGGAATGAGAGAAACTGGGATCAGGTGGGCCAGCCACAGCATTCTGGAAGCTCAGCATGTTTATTATAGACACTCGAGCAGGGAGGCAGGGTCAGTACATACAGCTAAGCAAGGAACCAGATTTAGCTAAGCTTGATAGGAGCAATCTCTGTAAGGAGCAGTCTCCAGGCTGTGAGTAGGGGTGTGGGGAAAAGCTCCAGTTTTCTGCACACACTCTCAACATTCACACTTAGACCAGGGAGAAAGCTTTGTTCTTCCCCTTTGGAGCTGAGGCATTGGTCTTTGACATGGCCAGGACCCTGCCAAGCATTACATTCACTACGGACTCTCTTGTGGTTCCCCACACCTAAGCCCTGGAAGCCTCTAGCCATGAGCCTCTCTGTGTCTGCAGTTGACCTGTAGCCACTTGGTGGGGCACCCACAGCTCCCATTGAACAGCCTGTGCTGACTTGGCTCTGCACACCACAACTTGGTTCTAATTTTTATTTTCATTCACACCTGACAGCAGACTCAGAGACTGAACGGCACACAGCAGCTGCCCACTTTGCATAATGGCCACCAGTCACTCAAGCACTTCCTTTCTCTGCCATGCAGAACCTGATTGAAATTCAAAGTGTTCCTTGTGTGCCCACACACTCACATGTGCATGTGTTCTTACACACAGACCACTAGAGGCCAAGACAGGTATAGTGAGTTCAGCAAAGACTTGAGTCATTTAGGTTAATGTTTTTTAAGAAGTTTCAAAAGGCACGATCTCCTTCCTTCTCTGAAGGACTGTGTTGCAAAGCCTTTACTCCACTTAAAAGGTGAGACTGGAGGATCCTTTGGCGGCAGGCCTGTCTCTGGCAGCAGTTTGGCCTGCCTCTCTCTCAGCCCCTCACTGCTCATTGCTGCCTTCCCTTGCAGATGATCAAGGCTTAGAGAGCTTTTCTCTTCTAACTGGAACGTCCCTGAAAACCCAGCATGCATTTGCAGAGACCTTTTTTATTTGAGATAAAGTCTCACAGGGTAGCCCAGGCTAGCCTGTAACTCACTATATCTAGCTCACTGTAACTCAGACTAGCCTTGCCCTTGGGCTTATAGCAACCTTCCTGCTTTCAACTTCCCAAGTGTGGTAGGAATAAAAGCATGAGTCACCACACCTGTATTCTCTCATGCTCGTTCCCTCCCCCACCCTCTACCCTGCCGCTCTTCTTTCCTTCATCTCTCGTTGTGTGGTTGTATGTGTATTTCTGAAACCTGTAGAATAGCTCTCCTGCTCATTAGTAATCGAACACTTTCTTGTAGCCGAGTGGTAGCAGCATACACCTTTGTTCCTTGCAAAGGCTGGTAGGTCTCTGAGTTCAAGTCCGACCTGGTCCACATAGTGAGCTCCAGATCAACCAGAGTTACACGAAGAACCCCTGTGTGGAGAAAAAGAATTCTTGTCTTACTGATGATGACATGGTTATATGCAAAACTGTCAGTGTAAAAATGTAATGGAAACAGTGAAAGCTGCCCTGGGAGTCTGTTTTAAAGGTGCCCTTAAGAATTTTCTGATCCTGGGCAGTGGTAGTGCACCACATATCTTTGATCCCAGCAGAGGGCAGGGGTTTCCTGTGAGTTCAAGGTCAGCCTGGTCTACAGTGAGTTCCAGGACAGCCAGGGTTGTTACATAGTGAGACCCTGTCTTGAAAAAATATCTTGTCCAAATATATATTATTTGTTGTTTTTTTAGAATTGTTACATTTTGTAATAGGGGAGGAGCATAGCGTAGTGCTCCTGTAGATGTCAGAAAGTCGCCTCCTTTCGCCACGTGGGGCCCAGCCATCCAACTCCCAAGTCTCAGTCTTGACAGCAAGGGCCTTTCCCTGCCGGGCCATCCATCTCCCTCCCCACAGGCATTTCCTGTGTGCTCTCATGACTGTTTCCTCGCTCTTCCAGCCCCGTTACAGTTGAACATTCAATTCCTCCTCCTGGCAGACTCACCTTACTCGTTTATTATGTTATGGCTGCCTGGGATGGTGTCTTGGCAGCACTCTGCCAACACTTGAGACATTTTTACATGTCATTTAGGGACAAGCCTGCACTGAGCATCTTTCTATAACCCACACTGGATTTCAGTACTGAGTGAAGATTAACATGGGGCTGAAGGCCAGTGTCTGCTTAGGATCCACTCTAGAATGATCATGTGGAATAAGTGTCCATTACCTCTGTAGGTTGGGGCGAGGAGGGAGGAGGGAGAGGGAGAGAGAGAGAACACGAGCAAGCGAACAAACTGGTATTTGCTGAATTTCAAAAAAAAAAAAAAGAAGAAGAAGTAGTAGTAAAACCTATGGAAAAGCAGAAATGCATAGAAAAGTCTGTGTGAGCACCTCTGAGGCCATTGCTTAGAAATACCTGCTCTGTGCACTCGCTTGTCTCAGGTTCTCCCAGCGTGTGTGCGGGGCAGTCATTTGTTGCAGAGGGTTGCATCCTCTGCTTTGGAGTTAGGCCGCACAGCAGAGGGTGTTTGCTGTCTTTTCTGGAAAGGAGAATGTGTCATGCCATGACAAACCCAAAGAGCAGCACTGTGAGACCTTGGGCACAAGGAGGTGACACGCCAGCTCCCCTTGGCTTGAAGATTGTCACAGGATACACTGGAGGTTCCAAAACCTGGAGCTGTGGCTCTGAGCAACAGCACACAGTCGGAGCTGTAGGGAATTACAGACCAGAACAGCACTCCTAACTGACTTTGGAATGTCCTTATTTTGTCCATTTCAG
Seq C2 exon
GTCCAGGGACGGCCAAGACAGAGTCACCTGTGACCTCCACCCCATCTACGGGGCAGCTCAACAAGCCTTTCTCATTCGCCTCCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023393:ENSRNOT00000037164:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=NA C2=0.847
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]