RnoINT0105353 @ rn6
Intron Retention
Gene
ENSRNOG00000036647 | Olr292
Description
olfactory receptor 292 [Source:RGD Symbol;Acc:1333185]
Coordinates
chr1:212808286-212809045:+
Coord C1 exon
chr1:212808286-212808309
Coord A exon
chr1:212808310-212808909
Coord C2 exon
chr1:212808910-212809045
Length
600 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCTGTTTGTGCACTTCACAGGCA
3' ss Score
7.69
Exon sequences
Seq C1 exon
GTATCCCTGAAACCATGGCATCAG
Seq A exon
GTAAGTGGTGGCTCTTTGTTAGCCCTTCCTTCCTCTTATCCATCATTACCTGGACAGCCAGCAGCAGCACTCTTTTCTGGCCTTTCCAGAGAATCTCTGAGACCACATGCCTGGGCACACCCTCCATATCAGGTATAAGCCTGTACGGTTGGGCTTATAGTCTGTGATGAAAACTGCTTATCTCTACTGTACCTGCTATATGGGAAAACACGGAGGACCAAACTCTCAGGTCATGAACGGCTGCTTCTAGGAGCCTTTAACTTGGAGATTGGGCAATTTTGCCTGAGTATGCTGTATTCTTTTGGATAGCATGCCCAGAGTAGAGCAGAGCAGGGCAGGGCAGGGCATAGCAGAGCAGAGGGAACACTGAGGACACCCACATGGACTTTCTGGGCCTGAGCACTTGGGCTTTTTCTCCTGGAGCATCTTACATGGTAAACACAGATCACCTCAGAGCAGTTCTTTGTCAATGTAACACTGATGCCAAGCTGTCCTCAGTTGCTCATAGAGAGTCTGATGTCTTCCAGGCTCAGCGTCAGCCTGTCCCAGGAAGCCTATGTATTTAGTAGATAATTCCTTACCTGTTTGTGCACTTCACAG
Seq C2 exon
GCAATTCCTCAGCTCCTCCACCTGTTCCTGAGGTCTGGACCATGCCTGAGATAGCCTGTTTGGTCCTTGGCTGCCTCTTGGGCATAGTCTTTCTGCTCCTGGCTGCTCAGTGGTGTCACAACAGAGCCATGGGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036647:ENSRNOT00000025680:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.193
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]