RnoINT0105771 @ rn6
Intron Retention
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80041731-80045138:-
Coord C1 exon
chr4:80045075-80045138
Coord A exon
chr4:80041810-80045074
Coord C2 exon
chr4:80041731-80041809
Length
3265 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TATTTGATATTTCATTTCAGACG
3' ss Score
6.71
Exon sequences
Seq C1 exon
GTCAGCCACCACCCGCCTATCTCCGCCTGCCACGCCGAGTCCCGGAACTTTGTTTTCTGGCAAG
Seq A exon
GTAATGTGCTGATCCGTTTGACCTCCTCCACCTTCATAGCACTAAAGGTTTTGTTTTCTCTGGGGATCACTCTGTCCCCATTGTTTGATCTCAGAGCTTCTCCTCACTTTTCCCCTGTAACTTATCTCACTTATTACAGGATTTATAGTGTTCCCAGCTTTTTGGCAGAGGGTAGGCAGCAAATAGATTCCTTGCTTTTTTAAAATTTAAATCTTGTTTCCAAAACTACAGTTGACACCTGACTTATATTCATCTTTGTTTTTATGAGTATCTTTTACCTACTTAACTCCCCCCTCCCAATTCATTTGGTGTCTGTGTGTCTGCGCATGCGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCATAGGTCAAATGATAACCCAGGACTGGGCTTTCATCTGCTGTCATGTGGTGTTGAAGGACGGAACTCATGTTGTAAGGATTGGTGACTTCCTGCTGAACCATCTCACTGTCCTCTTGGTCTTTTGTTTGGTTGGTTGGTCGGTTGGTTGGTTTTGTTGTTTCAAGTGTTGTTTGGAGGTTTTCTTCTGTGTTTCATGGTTGTTGTTCTCTTGCTTTGTTTTGCTTTTGTCTGGCTTTGTTTTTCGTGCTCTCAAGAGCATAGCCAAACGTTTAGGAAAGGCAAGCACTTATACCACTGAGGTATAGTCTTGGCCCATCTTTATATTTGGGGGTGGGAGGTTGGGGGGTGATTTTTGGTATTGAAGTTTCTAAAACTTATATTTGGAGATGGGTGAGATGGAAAGTTGCTCTAAAAACAATGCTTCGGATTTTTCCAAAATGAGTTAGTTCTGTTAAATTTTCATTTGTTCACAGGGTTGGGGTACAGGAGAAGCTGAGCATCTCGGGTTTTGTTTGTTGGAGAGAGAGCTCCCGTAGTCCAGGCTAGCCTCGAATTCTCTTTATAGACTAGGATGGCTTGGGACTTCTTATCCTCTGGCTTTACCACTCCCATACCTGGTTTATGCAGTACTAAGGACTACACTTGGGTCTCGTGCACTATGCAGTTACCAAACTGACGTACATCCTCAGTTCCTAATCAAGTTTTAAAACATTTTTCTTTATTAACATTGCCATTTGGTTCCCATGCCGTCTTTATACACACTTCTGTGTGCACATATATGATATTTAAAACTGCAAGAGCATACTGTTTAATACTTCCCACCCATCCTGCTCTGTTACCCACTTACTCTGTCTGGAGGTTGTTAATATTATTAGTTGAAAAGTAAAAGTTAAGTGTTTCTCTCTCTTTTTAAAAGACTTATTTACTTTTATTTATCTGAGTACACTGCAGCTGTCTTCAGACACACCAGAAGAGGGCATTGGATCTTGTTCCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGGAATTGAACTCGGGACCTCTGGAAGAGCAGTCAGTGTGCTTAACCACTGAGCCATCTCTCTAGCCCAAGTGTTTCTTTTCTTTAATCTTTTCTATCGATGCTTCACCTGAGATTTGTTTGCTTTTTGAGAAAACCCTCTGGAAATGTTTGTCATAAGGCTCCTAAACTTCTGCCTGATAAATCTCATTGGCCCTGTAAGTGCTGCTTCTTTGATTTCATAAAGCCTGCATTTTTATTTTTAACAAGAGAGCCTTCTCAAAATCCTTCCCTGGGTGATCCCACCTGTTTCCTAGGTGTAGGATCCTTATCTTCCTCATCTCATCTCAAATTTCTCTGCCCTTTAACTAAGTTGTTTAGATCACTTACATTTGTTGTGTTTATAGATGTAGTGATTTAAGTGTGCCTTGTTTTTTATTTGTCAAATCTGTCCCTTATATCCCCCTCTCCTCTTTTTATGCCTTCTTTTCTATTAGTTGAACACTGTCTGTCTGTCCATTTTACTGGATTATATCTGTAGCTCTCTGTTTTATGCCTTAGTTGTTACTTCAAGATTCATATTATGTATCTTTAAGGTACTGCAATCTGCCATCAACTGGCGAAACAGCAAAGCAAACCTGACGTTTGGAAGATTGTGCGTGTTACAAGTGTAGCAATGTGTTGTTATTATCTCTTCTCAAATCCAATTCTCCAGTTTCCAGTTTTCATACCAATTTTATTGAAAAATATATTCATACACTATATTGTTTACCCACTTAAAGTGTCTAACTTTGTGGTGTTTTAAAATTAGCACAATTAATTTTAAAATAGTTTAATCAGTCCAAAACCAGCTTCTTTGGCAAATATGCTCTCCCAGTTTCCTTTAACTTCACCATTTGCAGTATTCCATTGGAGGAGTCCTCCCACATGTCTCTCCTGGACTTCAGCCACACTTCTCCTAGCCGCCCTGCCTCTGCCTCTCCCTATAGTTCTTGTCTCAGTGCAGTGAATGATCAGGTCCTGCTTCCCATTCTTATTCTCCCTTCTCTCTCAGTGTCAGCATCCACAAATTAGGACAGCTGACATCACTTATAAACATTCCCTTCTTTTCTCAGCCTGTGACTGTTTGCCGCTCCATTTTCGCTTCTCCCCGTATGAACGCGCTGCCCCACAGCTGTGGGCTTGACTCACTCGTGCTGCTCCCTGAGCAGCCACAACCGCAGCTTCTCTTTCCACCTTACTTTTAACCCCTCCTGCTCATGTCCGTTCTCTGTATGGCTCTGACTTTTCTGCAAGTGTTTGTCTTGTTCCCTGAATGTTTTCAACTTAAAAAAAGACTTATTAGCCAGGCTTGCAGAACCATTTCTTCAATCTGACTCTCTCTACCCAAACCCTTAGATAATCTCAGACCTATAGGACACAGCCACAGTGGACTCTTATACCTCTGACCCTTTAAATACTATTTTCCCAACACTGATTTCTCTATATCCACAAACTCATTTGGATTCTACAAAACCCTATTTATGTGGCTCCTTCTGACAAGCCTCGTTCAAGGCCTTCCATAGACATAACAGCCTTCCCTTCTGCCCCCTGCTCCATCTCATGCTACAGCCCAGTGGGATAGCCTGTGGCTGCAGATGTGAGCCCGACTTGTTTCTGCTCCATGTTCATGCTGTTGACTCTTTCAAGAGGACTTTGTCTTACAGCCTTGCTTCCCTGGCTCTGGTTTTGGGTGCCCAGTTGGCATTGCTAGCACATGAGCGATTACCTCCACTAGAACTAATTTGACTGTGACCGTTACAGAGTGACCAGACTCTGTCTAGCTGTCTTGTTCAATATGTGATATTTGATATTTCATTTCAG
Seq C2 exon
ACGTGAGATGGAAAAACAAATTCTGGGGTAAATCCATGGAAATTGTCCCGATTGGTACTACCCATGTGACTCTGCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011:ENSRNOT00000013828:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.3=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(16.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]