RnoINT0106073 @ rn6
Intron Retention
Gene
ENSRNOG00000010983 | Otog
Description
otogelin [Source:RGD Symbol;Acc:1306610]
Coordinates
chr1:102302654-102305613:+
Coord C1 exon
chr1:102302654-102304380
Coord A exon
chr1:102304381-102305444
Coord C2 exon
chr1:102305445-102305613
Length
1064 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CACTCCACTTCATGCCGCAGCCC
3' ss Score
5.39
Exon sequences
Seq C1 exon
GTGTGGAGCCAGCCCTGCGGGGTCCCAAGGAGACCCTTGGTAATGAGACTCTGGCACCTGGTCAAGTGCTTCCCACCACCAGTGACAAGCAGCAGCTTCCACAGGAGCCCCCTGGAGCCTCCACCCACATCCCTGTCCTTGATCCACTAGCCCCACTCACCTCAGCCCCAAATCCACCAATGGCTGCCACTGAGGGGCCAGTGGCATCTCCAGGATCCACCCAACCCACGCTGCAGACATCACTGGGGCTTACAACATCTAACCTTCCTGCTGGCCACACAGAGGCCACAGCCAGAGAGGAAGGGGCTGCCAGCCTCCTAGCTACTTCTCCTCCCCCAGGGTCCTCCTCATCCCTCCCCAGTTCTCTGCAGACACCAACATCTGGCATTTTATCAAGTACAACAGAGACAACCAAAGTGACCTTAACCTTTGCAGGGAGTCCCAACACCACCGTCACTTCCCGGTCACCCCCCGTACCTCGCTTCCCACTCATGACCAAAGCAGTGACAGTCCCAAGTCATGACTCCTTTCCTGTTAAAACCACACCCCTGCGGCCCTCTTGGAGCCTCTCTTCCAGACCTACGACTTCCCCTGGAGTGACGTCCTGGCCCCCCACCTCCCTGGGATCCCACCTGTCAACTGTAGTAACTAATGTGACAAACAAGACAGAGACATCCCTGTCTGTCCTGGCCCAGAGCACTAAAAGTTCCAGCCAGCCCCTGAGCACAGCATACAGGGCTCCTGCCAGTCCTCTTGTCACCAAGGGCTTAGAGGGAGCGTCAGCCACAGAGAAGGGAGACGCTGGGCACAGTCAGCTTACAGAGTTGCCAGTGTCCCCGCCCCCAAGCTCAGCCCCCATTGACCTGCCTCACCCAGCCCAACATACCACCACAGCCCCTGGGTCTCCAGCTCTGTCCCCAGGGATCCTGGGTGCTGGCAGCCCATCCACAGGTGCTCATGGACTGGGGACCACAGCTTTAGCTTCTCTAGAGACAACTCGGCCACCCCACCTCCTCTCTGGCCTGCCTCCTGACACCAGCCTGCCCTTGGCTAAGGTGGGCACATCTGCCCCAGTGGCCACACCTGCCTCCAAAGGTTACGTTCCCACCCCTCCCCCTCAGCACTGGGCTACAACTTCAGCCACAGCCATGACTGTGACCCCACTTACTCAGACGACTCTCAGTCTGACAGCGCCACTCATGTCTGCTGTGGAGGAACAGGCACACTCACCTAGCCCCACAGCTCCCCACATAACAGCTATGACTCCAAGCTTTGGCGCCTCAGCAGGGACTGCTGGGGTGCCCCCCATGGTGTCTGTTGCCCCGCAGAAGAGCACCACCCAGAGAGCAGCCATTCTCTCTAAGAAGGTGTCTCCACCCACCCTCATCTCTGACTCTGTCCAGGGTGGGTTCACAGAACTCACGCCCACAGTGAGCCACACCGTTGCTCCCTTGGTGACTGAGGCTGAAGGCCCCCAGGCTGGCACAGTACCATTGGTGCCCACAACCCACTCCCTAAGCCGGGTGTCAGCCAGGACTGCCTCCCGGGAGGGCCCACTCGTTCTGCTGCCTCAGCTGGCAGAGGCCCACGGGACCCCAGCAGGGCTCCAGCCCCAAGAGGATCTAGTGCGTCAGGCCACCACGGAGCAGACAGGGCGCTCAGCTCCAGCCCAGAGCATTGCAGAGGGATCGATGGAGGCCGAAGGGAACACTTCTGCCATCTGTGTG
Seq A exon
GTGAGTGACTTGTTGGGTCCTTCTGTTTTGTGGATTGTCCCCAAGACCTGGCTTTCTCCCTGTCTCTAGGATGACCACCACCATAAGCTGTGCCTGTTGAGGCTCCTGTCCATTTTTACTCTATGCTACAAAGTGGCGGTAGTGTCCCTAAACTTGCTCAGGGTTTGGAAGAGAGGCTCAAGAGGGCCGCAGGGGTGTGGTTTTAACAGGAAAGGAGTCATGACTTGGGACTGTCACTGCTTTGGTCATGAGTGGGAAGCGAGGTACGGGGGGTGACCGGGAAGTGACGGTGGTGTTGGGACTCCCTGTAAAGGTTAAGGTCACTTTGGTTGTCTCTGTTGTATCTGAAAAATCGCCAGATGTGAGCGTCTGCAGAGAACTGGGGAGGGATGAGAAGGACCCTGGGAGGAGAGAAGAAGCTAGGAGGCTGGCAGCCCCTTCCTCTCTGGCTGTGGCCTCTGTGTGGCCAGCAGGAAGGTTAGATGTTGTAAGCCCCAGCGGTGTCTGCAGTGTGGGTTGGGTGGATCCTGGAGATGCCACTGGTACTGTAAAACCCACCAGGTCTCCCTGAAACCACAGCAGGGCCCCACCTTGCCTTTTTGGGTCCAGGGCTAATTGAATGCTTGGTGTGTTTCTGCAGGGTGTGGTGGGAACGAGCTTTGGACTGAAAGAAAGAATGGATGCATGCATCGAGAGAAAGAATGAATGCATGCATGTGTACTGCTCAGCTAGCTTTTTCTATGCTCACACAGTCTGGGGCTCAAAACCAAGGAATGGATTGCCCACGTTCAAGCTGGGTCTTCCCGCATCAATTAAAACAACCCACCACAAGCAGGCCCACAGTCTGACCTGATCCAGACAATCCCTCATTGAGACTCTCTTCCCAGGAGACTCTTGGTTGACTCAAGTTGACTATTGAAACCAGCCATCACAGGGCATCAGTCCCTAGTTTTATCTCCATGTTAGCTGTCCTGCTAGGACCTGGCTTGTTCCAGGAGAGTTGAGGTAGTCATTCCATAAGCTCCAAGGAGGCACTCATGTTGACACTCCACTTCATGCCGCAG
Seq C2 exon
CCCATCGCCGAACAAGACTGCGTCCGTCACATATGCCTAGAAGGCCAGCTAATCCGTGTGAACCAGACCCAGCACTGTCCTCAGGGTGCCGTACGCCCTCGCTGTGGGGTCCTGGGCCTCGCTGTCCGGGTGGGCGGAGATCACTGCTGCCCACTCTGGGAATGTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010983:ENSRNOT00000068434:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCTCCCTTGGTGACTGAG
R:
CACACGGATTAGCTGGCCTTC
Band lengths:
345-1409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]