RnoINT0106261 @ rn6
Intron Retention
Gene
ENSRNOG00000019794 | Ovch2
Description
ovochymase 2 [Source:RGD Symbol;Acc:1564636]
Coordinates
chr1:172017378-172018002:-
Coord C1 exon
chr1:172017862-172018002
Coord A exon
chr1:172017509-172017861
Coord C2 exon
chr1:172017378-172017508
Length
353 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
3' ss Seq
TCTGCCCTCCTTTGTTTTAGATT
3' ss Score
12.06
Exon sequences
Seq C1 exon
GGAAATTCTGTGGAGAAAGTCTCCCTTCATCTATTCTCATTGGTTCCAGTTCTATCCAGCTGAGATTCATCTCTGATGCCACAGATTATGCCACTGGGTTTAATCTCACCTATAAAGCTCTTAAGCCAAGCTACCATCCTG
Seq A exon
GTAAAACCATTTACTTCAGTTGTTTAATATCCAGGCCCTTTGCAGAAGCTTTGGCATCATAGGAGTTGAAGGTGGTAGTCAGGGAGACCCCCACTTGAGGTCTGCTGGCTTCATAGTATAGAAGGAATCTTGGCAAGCTGAAAGATGTAGCCTCTCTTCCCCAGTCCCTGAAAGTTCCTGATCACTGACCCAAGTGAGCTGAGAGGGCCTTCAGAGTTCTGTAAGCCAGAGCACGAGACTATCCCTTGGTGTTGGCACTGCCAAAAGATGTAACTTATCAGATAGAGACAGGAGGGAGAACACAAAAAGTCTTTCTTGTGTGCTTGAGTTTGCTCTGCCCTCCTTTGTTTTAG
Seq C2 exon
ATTCCGGCTGCAGGTCTCTAACTATCCTCTTTGAAGAAGGCACTATACAGAGTCTTCACTATCCTGAAGAGTACAGTGACATGGCTAGCTGTACCTGGATTTTTCAAGCCCCCAACCATTTCCTAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019794:ENSRNOT00000026807:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(34.9=77.1)
A:
NA
C2:
PF0043115=CUB=PU(36.7=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATTCTGTGGAGAAAGTCTC
R:
TAATTAGGAAATGGTTGGGGGCT
Band lengths:
270-623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]