RnoINT0108633 @ rn6
Intron Retention
Gene
ENSRNOG00000011310 | Pde10a
Description
phosphodiesterase 10A [Source:RGD Symbol;Acc:68434]
Coordinates
chr1:52374454-52377476:-
Coord C1 exon
chr1:52377326-52377476
Coord A exon
chr1:52374610-52377325
Coord C2 exon
chr1:52374454-52374609
Length
2716 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CATTCTCTCACCTCCCCAAGCGC
3' ss Score
4.62
Exon sequences
Seq C1 exon
TTTTGAACTTGAAAAATTGTGCCGTTTTATCATGTCTGTGAAGAAGAACTATAGGCGGGTTCCTTACCACAACTGGAAGCATGCAGTCACGGTGGCGCACTGCATGTACGCCATACTTCAAAACAACAATGGCCTCTTCACAGACCTTGAG
Seq A exon
GTAGGTGTGCATATCTTCCTACCAGCCAGCCTCAGTGTTGCAATGTCCCTGTCAAAGTGCATTTATCACATGGATTTAGCACGTACGCAAACACATATCACACTTTATTGGAAGTGTTGATCTGGAAATTTTACCTGTACCCAAATACCACCCCCCAAGGAAGTAAGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTGTTTGTCCTTTCTTTCTTACTAAAGTTGACAAGACCTGTGTGTATTTAACAGGGTGAATTTTTCTTCTTTATTTCTTTTTCTTTCTTTCTGGACTTTCAAGACGGGGCTTTTGTGTGCTAACCTGGCTGTCTTGAAACTCACCTTGTAGACCAGGTTGGCCTCTAACTTAGAGTTCCACCCACCCCCTCCTGCCTCCCTAGTATGAGGATTAAAGGCATATGTCACTGCTGCCTCACTAGGATTTTTTTTCTTGCTGTCCATATGCCCCAAATAATGTAGATATATCTGGATGATTTGAGATCTGGATGTTTTGAGAACACTGAGCAGTTAGCATCATTAAGACATTAGTGCCTTTTGGTCTCCTCCAGAACAAGGGAACAGGCCTCGAGGTACACAATTAGCTTCCCAGAGCTGACGCCAAGCTGGAAGATTTCACAGTCTCAGAGTCTTAAGGGTTGGAGACTTCTCATCCATCCAGCAAGGGGATAGTGCACTCCCAGCCAATTGCTGAGGGCCAGGACTAGTGTCTGAGTACCAGTGATGTCCAGCCCACTAAGGAACCAAACCTAAACTGCTTCTCTGAGCTCCTGGCCTACTGGTTCCACTAGCACTGCAAACCCAGGCCTCCTTTCTCCCTAAAAGCATCACACTGCAAGATCAGCACTGCCACCTCTAGCACGAGCTCACATTCACATTCAAAGCAGCTCTTCTCTGTCCCCTTGCTGCCCTGACAGACCAAGCTCATAGTTGGAACAGAAATCATGGAAGGTGGATTCCAGAAGTGGGGGGGGGGGGAATACCACCTTAGACCACACAGTAAAATGTGGGGCTGAAAAGGTGGCTCGGCAGGTGAGAGTTCTGACTGGGCAAGCCCAGGGCCTGAATCCAGATCCCAGCACCCACCCAAGCTGGGCATTGGCCATGCACAGTTTAACCCCAGCTTGTGGGAGACAGGCAGGGAGGGCTTCCTGGTCACCAGCCTAGTTCCAGTGAGAGATCTTGTATCAAAGGAATAAATAAGAAAGCCTTAAGGCAGGAGATCCTGTGTCCTTCTCAGGTCTCCACATGGGCACACCAACCAGTATGTGCACACAAGTATGTGTGACTCCCCCCACCCCCATGTGATACACCCACACCCTCACGCACATATACTCCAGTTGCACAGACAGGCATGCGAAGGAGCAAAATACAGTCTTGGTTGGTTTTTTGTTTGTTTGTTTGCTTTTTCTGATATGTTTTCTAAAATAATCTTGAGTTGTAGCAGAAGTTCGCTATATTATTTACTGTTTCCTGCAAAAGGTTCAAATGAAGTATGCTTCTTGTTCCCACGAATAGTTTTCTGTTCTAGTGAAATTTGTATTGTATTCTATGTGACATTTTTCTTTCTCTGTGTAACTCCTTTTGCTATTTCACAGTTCTTTCCTCATCTTGCTCTGGGGAACCTTTCTGTTAACTCTTTCTCTCAGTCTCGGAAGTCAGGTTCACTCCGGCTCTCGCCTTCCTCCCTTCTTACAGAGCCTGGGTGACTCTGCCTACTCAATTTCCACCTTGCCCACCGCTGACACTTGCCCTGGCCCCTGACCATCCACTCCCTGTGCTGCCTGTAGGATCTCCCACAGCTGCTGCTCTGTCCTTAAAAGGGGACCATGTTTGACCTTTCTCATCTTGCTTTCCATAGCCAGTCAGGAGAGCCCACTGGCATGCCTGGAAACTGCATCCAGACTTTTCTCCCACCTTTTAACACTTCTCTCACCATCCAGCCCTCACCCTCTGTGCCTTTCCTCAGTTTTTGCAAGCCTTTCTCATCTGTGCCTCACGCCCTCCTGGTGAATCCCTTACATATCCCCAGGCAGTCTCCTAAAACTGCCAGCTAGTTGCAGACACTGCTGTCCTGGAGTCCATTCACATTGCCCCTTGTCATTTGGAACATGAGGTCTGTGTGAGGACCCTAGGTCTCCAGCACGAGACTGGCCTTGCTCAGGCGTGCTCTTCTACCACAACCCTCCCAAACACCATGTTGCTTTCATCCCTCTTCTCACAAGTCACTGTTGGTATCTGGCTCTGGCCGGCCCAGACCGCTTGCTTTATTACATGGCAGACTCTCTTGGACTTCATGGTTCCTTGTTCCAATGTAGCATGCTCTTTTCACGTGTCCTGCGTTTGCATGTTTTGTATATTGGCTGAGTAGCAATGGCCTTGTTAGAACAAGGAGAACCCAAGCTTCCCGCTGCATGCACAGCCAAGCTTATCCACGAGCTTATCCACAATGCCTCGGTGCATTTGCTGCCTCCTCCTCCTTCCCCAGAGTTAAAGAGAAATTTTCTCATTTGCTCGTCAAGTTCCCATGCAGGAAAACAAAGAACAATGTTACAAAAAAAAGTCTGCAGTTTCAAAGATTCCTAAGAGTTTGGGTACATCCACAGAGAAAGGAGTGTGAAGGTAAGCTAGGGAACTCACCAGGTTGTAAACATCTCTGCATTCTCTCACCTCCCCAAG
Seq C2 exon
CGCAAAGGCCTGCTAATTGCCTGTCTGTGCCATGACCTGGACCACAGGGGCTTCAGTAACAGCTACCTGCAGAAATTCGACCACCCCCTGGCTGCGTTGTACTCCACCTCCACCATGGAGCAACACCACTTCTCCCAGACGGTGTCCATCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011310:ENSRNOT00000043474:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PU(11.9=54.9)
A:
NA
C2:
PF0023314=PDEase_I=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]