RnoINT0111253 @ rn6
Intron Retention
Gene
ENSRNOG00000020479 | Pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:RGD Symbol;Acc:1310389]
Coordinates
chr1:185320416-185321174:+
Coord C1 exon
chr1:185320416-185320488
Coord A exon
chr1:185320489-185321064
Coord C2 exon
chr1:185321065-185321174
Length
576 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GAAAGTATTTCTGTTTTCAGGTA
3' ss Score
7.45
Exon sequences
Seq C1 exon
TGTGACCTTGTTTGTACTTTTTTCCACCCCTTACTTCGTGATGAAAAAGCTGAAGGAATAGCTAGGTCTACAG
Seq A exon
GTGAGATTTTACCTTTTCCTTCTGGTTGATAATTATGAATTCTGTGATGGGGTGGAAATGTATGTGTGTAAGTGCATGTGTGTAGACCAGATATCAGCTTTGGGTGTCAGTCTTTTGTTTTTGTTTGTTTTTGTTGTTCTTGGGGTTTTTTTTAAGATTTTATGTGCATAAGTGTTTTACCTGAATGTATATATGTAGATCATATACATGCCTGCAGAGGTCAGAAGAGGGAATTGCATCTCCTGGAACTAGAGTTATGGGTGATTGTAAGCCATTATGGGAGTGCTGGGAATAGAACCCAGGGTTTCTCTAAGAGCAACAAATTCTCTCTGTTTGTCTGTCTCCCTCTCTCCCTCTCTTTCCAGGGAAGTCTTTCTAAGCCAGTCTATTTCTGGAAAAACTTAGCATTTTTAATAATTAGCATGTGATTTCCAAAAAAAGTACAAATTAGTGGCATATGAAATTTACTTTTCCTATTTGCTTTCTCTCACCCTACCCTCATGCAGCAGTTCTTTTGCTGAAGTGTGAGCCATTTCAGGCACATTGAGATAAAGAAGAAAGTATTTCTGTTTTCAG
Seq C2 exon
GTACAAGTCCCTTCAGCCCTACTTTGGGCCAAATAGGAGGAGCAGTGAAGTTATCGGTTTCTTACCGAAATGGCACCCTCTTCATCATGGTGATGCACATCAAAGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020479:ENSRNOT00000055120:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0078719=PX=PD(8.8=40.0)
A:
NA
C2:
PF0016825=C2=PU(11.2=27.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]