RnoINT0111308 @ rn6
Intron Retention
Gene
ENSRNOG00000034228 | Pik3c2g
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:RGD Symbol;Acc:620231]
Coordinates
chr4:173988518-173992860:+
Coord C1 exon
chr4:173988518-173988647
Coord A exon
chr4:173988648-173992723
Coord C2 exon
chr4:173992724-173992860
Length
4076 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
CTTTCTCCCTTATCATCCAGGAT
3' ss Score
10.5
Exon sequences
Seq C1 exon
GCCGGCGACGATCTTCGGCAGGATATGCTTGTTCTGCAGATTATTCAAGTGATGGACAACGTTTGGCTTCAGGAGGGCCTCGATATGCAAATGATCATTTATGGATGTCTAGCCACAGGAAAGGCTCAAG
Seq A exon
GTCAGTACAGATTTGAAAATAAGGCGATTTACATTTTTTAACCTGGTTGGTTCACTGGTAAGATACTACAAACCGCCGGCTTTTATTTTAGGATCCACAGTCAAAGATCCAAGGACCCATGTGTATTCCTTTTCAGGTTTCAAAATTACAAACCAGGATGATTGATGTAAAACATAGCACACTGTGGGACGTTGTGACTTTGCAATTCAGATGTGAACTGGGATGTTCTTTTGCTTCTCTCAGGGAGTTAGCTGCACTAATGGCTACTCTTTCTTTTCTTCATTTCCTAAGATAATACAGATATTGACACCCTCAGTGGAGCTACCATGGAAGCAGGCATCCCAGATTTGTGCTCTAACAGATATTGATAGGCTGGGAAGAGATGCATATCCGAACTTCAAAGTGCAATTTTCTCCTGAATGTGTGTCAGTCACATTTCACAAAAGTCTCACACCATCCGTAATAGAATAACATGACCGTGCAAAACTACTCTCACCGTGAACACACACTATCCATGTGTTTAAGAAACCGTCAGCCTTGTAAATACATGGTATAAAAACATTTGTTCATTAATTATATCTTACTTATTATTTGCACACACACACACACACACACACACATACAATGTCGGTGAGTGGAAGCAAGCATGCAATGGTACACAGGTGGAGATCAGATGACAACGTTGGGGATGAGCTCTCTCCTTCCACCATGCCAGTCTTGAGATTCAAACTTGGTCATCAGGCTTGAATGGCAAGATGATTTACTTCCTGAGCCATCTCCCTTGCCCAAAACTGGCATTTAAATTCTAAAAGAATTTTGAATAGCTATAAAAAATCAGTCAAAATGAACAAACATGCACACTTTGAGCATAACTCAGTATTTCTTTTCCTTTGTAAAAACCAAACATAGATATGGAACGAAAGACTACATGGTTTAGGTCAATCGATCAGTTTCAGTCTCAGAAAGTATCAGTGTTTTTATTCTGTAGGTTTGCAAATTTCACACTAATTCTTGTAATTGAACAGAGCCTTGGGATTTCCTACATAGTTACGCTACTTTCTCCTTTTCAAATGTTTTGGTGGTGAGCATTCACCCTTCCTGTTGTAGGGCTCAATAAAGAGCATTTTCTTAAAGCACATCAAGTATTTTAGTTACCTCATTCCCTCTCCTTTCCCTTCCTCCTGTCCCCTTCATGTCAGTCTCCTTCTATTCTGAAGCTCTTCTCCTTGCATGTCATATGATATATATATGTATATATGTATATGTGTGTGTGTATTGTAAGTGTATGTAAATGTGTATATGTACATGTATGCATGCATGCATATATATATAATTTTATATATTTATAAAAAGCTTGATCCACAAATGGAAAATATATACCATTTATCTTTCTGACCCTTGCTCATCTCACATAATATATCTCATCATGGTATTCATATATTCAATATAACAACCTCTCATGGTATTTATTTTCCAGCAAGCAGCATAACTTCATTCTTCTTTGTGAGTAAATAAAAGTCCGTTGTGCATATACCATGTTTTCTTTATCTGCTTATGGTTTCATTCACTTACTCTGGAAAAATATTCTAAGGCACATAGTCATCGCTTTTAATTCAAAGAGATCTACTATTTAAACCCATTGTTGCAAAGGAGTCATCACCACGAAGCACCTCTCTTCCTGAGGCTCCAGCAGCAGCCTCAGTGTCTTAGCCATTATATCTTGAGAGGTCACCTCTAATGGCAGACAGAATTCCCTCTACCCCTGGGAGACTTAGAAGGAACCATTGTAAACCAGAGACAAGCTACTTTTGTTCCAATAGTAGGGGCCCCTTGTTCCAAGCCAAGTGGCCCCCCAGACATTTTCCAATTTCTTAAGAACGGCCTTTGATTCCTACTACACTGGAATTGTCCTAGCCTAAATTCCACCTTTCCTAGTCTCACAGAAGGAACCTAATTCTTCCATATCCTAACCTGCTGGAAAAGTTAAAATGAATTCGGCCTCGCCAGGCTGTGCTTCTCATTGCTCATAGATCACCTGTGCTTTAGAAATTGAATGAATGCTGGGTCCCAGTGGAATGCTTCAATTCCATCTACCCGTGTCTGTTTGTTATCTCAGCATGCAACCCAGGTGAAATCTTTCAGTGTTAATCAGGAGATTCAGAAGAAACAACTGTAGGCTTTCCCAAAGTGGCAAACCGCAGAAGACAAGCTATTTTCCCCTCTGTGTACCGACAGCCTTCTGTGATGGCAAGATTTATAGAGGGAATTATGCTGACAGAATACGCCTTCAACAAAAGTAGAGACTAAAACAAACGTCGTTTTCAGAAGACAAGGCTGCATTGCCATTCCACCCCAGGGCATATCGGGTACCTATTGTTCAAAGAGCATTCGGTTTTACTATTCCCTCTCTGTGGTCAGAGAGTTTTTCTGGTTCCCTTCATCCTCCAAGCGTTTGATTGTGCAACTCTTAACTACTGTAAGTATTGCAAACATCAGAAAGTCTAGGTTTCGATTTATTCTAGTGATTTTATTTATGAAGCAGTGCCTGGAGAGTTATTGGGGGATATTCATCTTGGGAGAGTTTGAAATACTACTTAAACTGTCTTCCTGTATAGACTGAAAATCAGAGGTCTTGAAAATATTTACATGTTAACAACCTTACGAACACAATGAAATGTCTTGATGGATGAATGGCTGTGGAGGCAAAGGTCCTCCTTAAGTTCAATCGATAGGTGCTCCCTTTTAAATAAAATCATTATTACAGCATCTCCCTAATGGTGTCTGCCACAGAAAGTGCATGTGGCTATCCCCAGGCCTTCTGTTCACCTTGAGAAAGCTAACATTTAATGGTAGTGCTTTCACTAACCTAAAAGGAATTCTATTTTTAAAGTGTGTGTGTGTGTGTGTGTGCACTCATGTGTATATCCATGTTCTAGCATGTGTGTGCACATGCATGTGTACAAACATTCATGTGAAAGCTGAAGATTGAGGAGGAACAGCTTCCACCTCACTCTCCAATCTACATATAGAGGAATAGTCTTTTTAAAAAGTTCTGGAGATACTTTACATGAAAACAATGAAATATGATTGTGTCTGCTCCCTTTTTATCTCCTGTAATTCCCCTCCTATCCCCCAGTCCTGGGATCTGTCACAGCCATTGTCCTCATGCACTTGAGCAGCTGGGCATTACCCTCATAAGACCTGCACAGTATCAAGCCAGTTAAAACTCAAGCACAGACTAGACATGCAATGCCCACGTCCACCCTGTACTAAAGAACTATTAGCAGTGAGTGATGTTTTTTTTTTTGTTTAGATTTTATCCACTGGTAGGATTTCCATGTTACCATGGATGGCTCCAAAAATCACACACATATAAATAACATTGACTGGACCTATGAAATTCAGAGAAGAAAGGGGAGGAAGAAAAGAACAAAGGGAGCCTCTTGCTGAATCCAGAGCTTTCAGATATGGGAGTCTAGCTACCCATCTTGCTTTATAACCACCTCTCAAGGGCTGACATTTATAGGCACACCACTGTATGGGCTCTATACAATTCCATGAGGATTTGAACATCAGTTCCCAGGTTTTTAAGCACTTTATGAATGAACCGTTTCTCAGCACTATGAATTGAGATTTTTATCGTTTATCTGACATGTTTATTGAGGGATTTATATTTTGTTCACTGAAGGCAAAATTTGCATTTGCTATTCAAATGTGAACCTCCTCCTGTAAAGGTTCATGACCCTGCACCCCCAGACATGTGACAGCCAGCTTTTCTAGTGACCACGGAGCTCCCATGAGACCACCTATGGCGGCTTTTTAACCATAGTTCTAGAAAAACATTAAGCTGCTTCTGATAGATCTGATGGAAACAATGTATTCAGATTGATCAGACTTGGGAGGGATGATCAGAAGCCCTCTGTAAGGGCGTCTACAAGGACGGTGTGAGAGGAAAGAAGCAGTACAAGCAGTGCTGACAAACTGTTGCTACCGCACACAGTGAGGCACGTGGTCTAAATGCTGCTCATCCTGGAAAGCAAAAACGGTCCCCTTAACCTTTCTCCCTTATCATCCAG
Seq C2 exon
GATTCATAGAGATGGTGCCTGATGCTGTAACGCTTGCTAAGATCCATCTGCACTCTGGGCTGATAGGACCCCTGAAAGAAAACACCATCAAGAAGTGGTTCAGTCAGCACAACCACTTAAAGGAAGATTATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034228:ENSRNOT00000041499:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(19.9=100)
A:
NA
C2:
PF0045422=PI3_PI4_kinase=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]