RnoINT0111325 @ rn6
Intron Retention
Gene
ENSRNOG00000034228 | Pik3c2g
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:RGD Symbol;Acc:620231]
Coordinates
chr4:173816404-173820559:+
Coord C1 exon
chr4:173816404-173816463
Coord A exon
chr4:173816464-173820436
Coord C2 exon
chr4:173820437-173820559
Length
3973 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGTGATCTTGTCATCTACAGCCA
3' ss Score
8.94
Exon sequences
Seq C1 exon
GAAGATGTGGAGGAGAAACCTCTGTCATCCATGTTTTCCTGTGGCCGACACCCTCCTCAG
Seq A exon
GTGAGTTTCTTAGGTAAAGTATCAGGAATCTGAGCCTGTGAGGGCTGCAATACATCAAACGCCTTCAAAGATAAATTCAGAACATGTCTCACAGAACATAGCATTGCATGACTACATTGGGTTTCATTATCTCAAATGATCAGAGTGAGGAGGAATTTAGCCCAGTCTGCGGATTACAGAGCTCTTCTGCAAACTACCCTGATGCTTATGCGCAAGCAAATGGAGGAGTTCATTCTTCCTGGAGATACCTTCTCAATTCTTAAATCAATACTTTTGAGAGCTTTTTTTAAAATCATATGTTCTAAAATTCACTTTTCTTTATATGTGAATACAGGACTTTCATAGGATTTGGCCATTCAAAACAAATTTTCTCTGTAACCACTGTACTGTGCATGTGTTCATGTATGTACATGCATTTGTGTGCACACTGTATGTATATGCATGTGTACATATGTACATGAGTCTATGTGTGTGCATGTGTATATATGTATGTGTTTCTGTGCATGCGCATGTATACACATGTATTTTTGTTCATACATATGTGTGTGTGCATGGATGCATATGTAATGTGTATACATACCTCAAATTTATATACATGCACACACACATGTATGTATGGTTGGAAAGTGTGTCCGCACAGATGCTTTGAGTCTGCTTCTGCCTGAGGCCAAAATAACACCTACCTCTGAAGTCGTTACTTTCCCATAACTGTAACTGGCAATTTGTCAAGGAACAGCTTACGGCAGGAGGGTGTGATGTGGCTCATGGTTTGAGGGGCTACCATCCACTGTGGTAGGAAGCATGGCAGCAGTCAGCTCATGGTGGTGAGAAGAAAATGGTCAGAGACAGGTTTGTCTCTTCACATAGACAAAGCCAGAAAGAATAGAATTGGGATGAAAGAAGGGCTAACCTGTAACCTGTAAGTCCTGCCACCAGGCAGTCCACTTTTGCAGCCACCTCCCACCTCGTAGACTACAGGGCACCTCATATTCACGCCACACTGACCTACTGACATTATTAACACAACTTCATAAAATTATATAGGTTAACGTCTACAGGTTTGTATAACAAGGGGTGAGGCTATCAGCTTTTCAGATAGCAGCTATAGGAAGGAAAGAGTGTTCTGAGCTCCCTGCCAGTCAGCTGTCTTCTCCTTTCCAGGTTATAACCCACGCATTGTCCTTTGTCGACTCTGGGTCCTAGCTCTCAATCATTCCTTCTCCCATCCCATCCAACCATGAGGTTTAATCCATCAGCACCTGTCTGAATGTGAGCTATAAACATTAAGTCCGCATGTCAGAACCTAAATCCAGACCGATAGTTCCCTGGGACCCCTGAAGGACCAATGTTTGAGCTGCAGCCCAGAGTGGACATGTCCTCTTAGCTTTCTGTCATCTGGAGGACCGATCAACCAATCTCTGTTATGGGCTAAGCTGTGCATTCAGTCTTTTCTGAGCATACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTATGTGTGTAGACTAGATATCACATTGCCAGAGTCCCAAGGTGATTCAGGATTTTCATTTTAATTGATAATATGTCTTCATTTTAAAGAATTTACACTTTTGGGATCTTCCCAGTACACAAGTCAGGAAACACCACCTTATATGTAAATAATAATCTTACGGCATTTAGTCCTCACTTCATTAGTTGTCTGTGCAAAATAGATGAGGTCTGATTCTTTTATAATGAAAAACATACATGACTAGATCAAAATTAATCATTAGAATTTTATGATTTACACATGTTTTTATATTTTATCTCATGAAATCTCAATAGTAAGTTTCAAGTCGATTACTATGATTCCTAATGTAGAGAAGACATTATCTAGGCATGTGGGAGTAAATACTGAAATGATGATTGTGGGTAGAACCTCCCTGTGGAACTGTGCTGACCTCAGTGAATATGTTGACTTTCTATTTGTAAAAGTAGTTTTCACTTGCCTGATTTAACTGTTGTCTCAGAGGCTTACTGCTGAATAAGCTCACTCTTACTAGATCTTTCTGGACTCTGGGTGGCTGATTCAACTCAGGTGTTTTGGCCCAAACTCCTCTCCAAGCTGACTGATTCAAGCTGGCTTCTCTCAGTTTCTGACTGAATTGTTCTGCTTGGCCTGAACCGAACTCTGCCAATCTGTTTTAATCTTCTTTCAATTCTCTGGTTCATTCTGTTTTCACTTGTTACTTGTCTCTGTAAAACTGTAGCAGTAAAGCTGACACACACCCACACCACCCATCACCAACCACATCACTCCTCTTTTTCTCTCTTTCTGCTCTTAAGTAGCCTCGTTCTTCTGCTGTTCTTGTGTTGAGTTAGGCGTATCCTATCTTGGACTCATTCTTTCAAATCTCTCTCTAATTCATCACTTTGTCTGTCCCTCAATTAAATGTCATGCCCAAACATGGCTGCTTCCTTCTGCAAACTAGCTTTACCAACATTGTTTGGGTTTAAAGGTGTGTGCTAAGGACATGTATGTTATCCAGTCAGAGGGATTAAATATGTGTTTGTATTCCAGCCAGGTCATACAGACCTAGAAAATTTTTGGATGTGATTCTTTGCTAGAGCAGCCATGTTGCTGGATAAAAATTCTATGTCTATTAACATGGGTAATGTTCTTTTACGGAGCAATACAGTTTTTCAAGTTCAGTCTTAAGCATGACACTCCAAATTACAACGGTGTATTGATGGAAATTGCAGAAACTGCACAGAAATTGCAGCCTTTACTGGTTATTAGAGGCGTATGTATTTTGGTTGAGTTTATTAACCATGTAGGATTCTGGTACCTACGTAATTCTCAGTAAGCCCACTTTGATGAGTCACATGCTGATGAAGCAGCTGACTCTTCCCCCAAAGGGACTGCTCATAAATATTTGTCCTCCATAGTATAATGAACAGCCACATAGTTTCAATCTGTGAAAGACTTAAAAATGAATCTTTACTAAATCATTCCCTCTTATTTGTGCTCATCAGTCAGGTCTGTTGATGTTTGTAGGATGTCTATGTTGTCTTCTGTACTATTCATTAATTATTCTCACTGAAGTTAATTTCAGTGTCTATTTTAAGATTCTCTTAAGTTGTACTAGGAAGGCATCAAGAAGTGGTTTTATTTCCCACTAAATAGGTGAAATCGTGTCCTATTAGTGAACAAAACCTCCTGAATGTAAAATTTAATTGATGTTTTGTTAAGAAAATATTCCAGAACACGTAGGTTTGAGTATTTTATTTTGTGACTCTTTATCTTTGCCTCACTCTCTCCTATTTTATCACTCCTCCTGTCCACTGTCATTGTCCTGTGCAGATCTTGTCTGCTGGGACTGAGATCTGAGGACCTGAAAGGATAGAGCAGGCTACCTCACTTCAGTTTCACTGTACTTTTATACACGAATGTAACAAAGAAACCAATGATCCAAGAAGGGCTCTTTGAGTTTGGAAAGCATAACAGCTGCCTGCCATGTGTATCTGGGAAAGCACAAAAGCAGAAGAAGTTGATAACCAGATTCAGAGCACAATGACCAGATTGAGTTCTACGAGCTGACACCCAACACGAATAGGCATGTCTTACAATTGAATGTGTTTATCCCAGGAGGCACAAAATCAAGTCCAAGACCAATGCAGAGGATAAAATACACCTGAGCTAAAATACCCTCTGTCTCTTTTCCTGGAGCGTCCCTCGGTTGCCCAAGCTTTGTTCATTACAGGTCCTTCTTTTGTCTGTGTTGCAACACCTCCATCCTCTTCTTTTATCTCTTTGTTCTTTTCTTCCCTCTCTTATTTATTTTAAATAATGATAAATTAGATTTCAGTTACTTAGTAGTTGTGTGAAGCTAAATAGAAGCTTGAGTGTGAGAACGGCTAATTACCTTCCATTCCACTTCTTCTTCATGAGAAAGAGGCCAACTGTGAATTTTAATAAATGGTGATATGTGATCTTGTCATCTACAG
Seq C2 exon
CCACATGGGAATGACATTATTGAAGATGTTAGAAACATATGCAGTGTTCTGGGGTGTATTGAAACCAAACAAGTTTCAGATGCAGTAAAAGAACTAACTCTAATTCTGCAGAGACCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034228:ENSRNOT00000041499:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.073
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]