RnoINT0112238 @ rn6
Intron Retention
Gene
ENSRNOG00000004131 | Pkn1
Description
protein kinase N1 [Source:RGD Symbol;Acc:69308]
Coordinates
chr19:24810876-24811176:-
Coord C1 exon
chr19:24811101-24811176
Coord A exon
chr19:24811018-24811100
Coord C2 exon
chr19:24810876-24811017
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CCCTACCCTTGCAACTTCAGGGC
3' ss Score
7.29
Exon sequences
Seq C1 exon
GTCACCTTCCGTAACCCCATCATCGAGCGGATCCCTAGGCTCCAAAGGCAGAAAAAAATTTTCTCCAAGCAGCAAG
Seq A exon
GTAAGGAGGCCCTGAGTGAGCTGGGCTGGACAGCCAAGGACCCCAGGATGTCATGGGTGGTGACCCTACCCTTGCAACTTCAG
Seq C2 exon
GGCAGACATTTCAGCGTGCCAGACAGATGAACATCGATGTGGCCACCTGGGTGCGGCTGCTCCGGAGACTCATCCCGAACGCCGTGGCCACTGGCTCCTTCAGCCCCAATGCATCTCCAGGCTCTGAGATCCGGAGCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004131:ENSRNOT00000005770:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.354
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCGAGCGGATCCCTAGG
R:
GATGCATTGGGGCTGAAGGAG
Band lengths:
173-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]