RnoINT0112261 @ rn6
Intron Retention
Gene
ENSRNOG00000011317 | Pkn2
Description
protein kinase N2 [Source:RGD Symbol;Acc:620146]
Coordinates
chr2:248758205-248758855:-
Coord C1 exon
chr2:248758729-248758855
Coord A exon
chr2:248758336-248758728
Coord C2 exon
chr2:248758205-248758335
Length
393 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
3' ss Seq
GAGCACTTGATATTTTACAGGGT
3' ss Score
5.27
Exon sequences
Seq C1 exon
TGATTCTACAGTAACCAAATTGGACTTTGATCTTGAACCTGAAGCTCCTCCAGCCCCACCACGTGCTTCTTCCCTTGGAGAGATAGATGACTCTTCTGAATTGAGAGTTTTGGATATACCTGGACAG
Seq A exon
GCAAGGCACTCTAAACATTCCTTGTACAATTTTTTCTTAAAATAAGACCATTATAGTGGCTAAACAGTATGTGTTTATGTTTTTTTTGTTCTTTTTCTAATTTATGAGTAAATTTTCTCAGGTAGATGAAATTGATAGGAGTTAGTCCCTTTTTTCCTGTTGGAACACTGTTACCTTTAGCCTCTGTTCTCAGAGGCCAAAAGGAATGCAATGGATTGCATACATTAGAAGATGGTGTGCCGGGGGTGGGGTGGGGAGCTGTTTGTTTGTTTGATTGTTTAACAAGAAGAACAAATGAGCCAATCTGAAACTTTTTCTCAAATGCTTCTGACTTTTATTAAATAATGTATTTACTGAAGTGTCCTAGTTTAATGAGCACTTGATATTTTACAG
Seq C2 exon
GGTTCAGAAACTGTTTTCGATATTGAGAATGACAGAAATAACATGCGTCCAAAATCCAAATCTGAATATGAGCTTAACATTCCTGACTCAAGTCGAAGCTGTTGGAGTGTTGGAGAACTTGAGGACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011317:ENSRNOT00000031748:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.740 A=NA C2=0.466
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTCTACAGTAACCAAATTGGACT
R:
TGTCCTCAAGTTCTCCAACACT
Band lengths:
254-647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]