RnoINT0112263 @ rn6
Intron Retention
Gene
ENSRNOG00000011317 | Pkn2
Description
protein kinase N2 [Source:RGD Symbol;Acc:620146]
Coordinates
chr2:248756568-248756811:-
Coord C1 exon
chr2:248756736-248756811
Coord A exon
chr2:248756660-248756735
Coord C2 exon
chr2:248756568-248756659
Length
76 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
TTATTTTATTCTTATTTCAGGTG
3' ss Score
10.44
Exon sequences
Seq C1 exon
ATCTCAACAGAGGTTTCAGTTTAATCTACAAGACTTCAGGTGCTGTGCTGTCTTGGGGAGAGGACACTTTGGAAAG
Seq A exon
GTAATCTGTCAGCACTTTAGGAATACATATAGATTAGAAATTCTAATAGAACTCAATTATTTTATTCTTATTTCAG
Seq C2 exon
GTGCTGTTGGCAGAATATAAACACACAAATGAAATGTTTGCAATAAAAGCCTTAAAGAAAGGGGACATTGTGGCACGAGATGAAGTAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011317:ENSRNOT00000031748:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(5.0=50.0)
A:
NA
C2:
PF0006920=Pkinase=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAACAGAGGTTTCAGTTTAATCT
R:
CTGTCTACTTCATCTCGTGCCAC
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]