RnoINT0113536 @ rn6
Intron Retention
Gene
ENSRNOG00000017223 | Plg
Description
plasminogen [Source:RGD Symbol;Acc:619893]
Coordinates
chr1:48548222-48550590:-
Coord C1 exon
chr1:48550470-48550590
Coord A exon
chr1:48548341-48550469
Coord C2 exon
chr1:48548222-48548340
Length
2129 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
AATCCTTCTTGTCTGCCCAGATT
3' ss Score
7.41
Exon sequences
Seq C1 exon
AGGAATGCATGTACTGCAGTGGAGAAAAGTACGAGGGCAAAATCTCCAAGACCATGTCTGGACTCGACTGCCAGTCCTGGGATTCTCAGAGCCCACATGCTCACGGATACATCCCTGCCAA
Seq A exon
GTAAGGTCCTGCAGCCAAGCCTGAGGCTTTTTAGATATGCACGCCTCTTGAAGGCATGAAACATCTGAGGAATTGAAGGCTGGGTAGTTTTGATTTTCAAGGAGGGCATCTTTCCCACTAGGCTGCTTATAAAGTATATATTCTTGTTACTTATCCCATGATCCAGAGGTATCATGGGTACTTGCTAGAAAGGCAGCATCCAAGCCTTTCTCAAATAGAATTCGAGTTATAACAAAATTCACAGCCAATTTGTATTTCTGATAAAACTGAGAAACACACTTGGCTTGACTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCCTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCAAACCCAGGGCCTTGAGCTTCCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCCCATTCCTTTCTTTTTATACCAGTATAGTCTAGACATTCTAACTGTGATCTATAGGTATCAAGCGTCTTACAGATCCCCGATATTTGATGTATATTTATACTGTGCCATTCACAGCTCTTACCATGTTCTCAAAGGTGACTGTGAGTTTAAGAACAGGACCAGGGGCTCCCTGTTGCAGAAGGCAGTGATGGTTTTCAGAGCAAGCACTTGTGAGGGTTCAAGGTCGTATTTTTTCACAGGAAAACATCTCCCCACAGATGTCATGCTCTTACTTTTTCTGTGATGACCCTGGTGTCATAACAAGGCTACTAAGACTCTCAGTAGTGTGGCTAAGCCACAGCTGTCCCTGTGAATGGTGACATCGCTGAGTTTTGCATCTTTCCATTCCAAAGAACTTAAAACATGGCTCCTGCCATTGCCTTTCAAAGGCAAGCACAATAGTGTCCTTAAAGTATGACTAGGTCAAGCCAACTGTAGAAATCAGAAGAGGGGCAATTAGACCATTGCTAGCTTTTCTCTTTGTTCTAAACGCCCAGTCTCAGAAAGGAACTGGGCACAGAGACAATCTCCCAGTTAAACCCCTGGGTCCTTGCCAAGTAGGACTCCCTGGCCAGGTCCTTGAAGGAACATAGTTCCCAATCTTGGATTCTCTAAGCTTCCTGGTAATGGGCCGGGAGCCTGGTAGACCAGTAGGACCAGGCATCAATTTCCTGCCTCTACCACATGACTGTCTGAAGACAGTGAGCACTTTGTTCTTTGAAGATTGCTATTATTTGCAGCTGGATAACTGAAGTTTGCTTGCTTCAATATTCTGGATGGTTAGTTTCTCATCTTCTTCTATATGTCTTGCACATGGAAACCTCTAGAAATGTAGTCCTTGGAAGACCAAGCCTATCTTTCTTCCTGGGTTACCAGCAGAAGACTAACTCTAATGGCAGGTGCTAAGCGGTTGCTCATTCTCAAAGATTCTCATGAATCTGCATGAATGTTTATTGCTATTAAAAAAATCCATCTTCAACAGCATAAGCTGTCACTTGCGTTTTTGATCTCAGCCATTCCGATAGCCATAAGGTGGAATCTCAGTCGTTTTGATTTGCATTTCCCTGATAGCTAAGGATGTTGAACATTTCTTTAAGTATTTCTTGACCATTTAAGAGTCCTCTGTTGAGAACTCTGTTTAGATCTGCACCTCACTTTTCTAATTGGATTGTTTAGTTTGTTGATGTCTAGTTTCTCAAGCTCGTTAGTGTAGATCTATCTCTGTCAGATGTAGAGTTGGTGAAAATCTTTCCCCATCCACTGGGCTGCCATTTTGTCCTATTGACAGTGTCTTTTGCTTTGCAGAAGCTTTTTAGTGTCCCTGGGAAGCCTACTCTTTTCCGAGGGAAGGCAAAGGGTGGGAAGTAAATCTGGGGGAGAAGGGAGGTGAGAGGGAAAGACTGGAGGAGGGGAAGAAGGAGAAACCAGTCGAGATGTAATAAACAAGAGAACAATAAAAAATTAGAAAAGTAAAAAGAAGTACATGATGAATTATATGATTTTTTTAATTCTTAAATTATTGGTATGTTATCACAGCAAATGATAAAATGAAAGAGAACAAGGGTAAAAAAAAATCCTTCTTGTCTGCCCAG
Seq C2 exon
ATTTCCAAGCAAGAACTTGAAGATGAATTACTGTCGCAACCCTGACGGGGAGCCGCGGCCCTGGTGCTTCACCACAGACCCCAACAAACGCTGGGAATACTGTGACATCCCCCGCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017223:ENSRNOT00000023368:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(48.7=92.7)
A:
NA
C2:
PF0005113=Kringle=PD(50.0=95.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]