RnoINT0115590 @ rn6
Intron Retention
Gene
ENSRNOG00000059091 | Potem
Description
POTE ankyrin domain family member M [Source:RGD Symbol;Acc:1563748]
Coordinates
chr16:22111866-22116834:-
Coord C1 exon
chr16:22116578-22116834
Coord A exon
chr16:22111981-22116577
Coord C2 exon
chr16:22111866-22111980
Length
4597 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
AATGTGTTTTCAATTTGCAGGAC
3' ss Score
10.31
Exon sequences
Seq C1 exon
ATGGAGGAAGATTTTGAATATGATGCTCTGGCATTGAAGTTCCCCAGAAGGGGACGCTGGTACACCCGTCTGTGGCGCTCCTGTCCTGGTTTTGGATGCCTGCGTCAAAAGAAAACGACGAAATTTCCCCTCTATCTGATCGGGTATGATCCCGTGGGTCGATTACAAAGAGCGGCCTGTGTTGGGGACGTGGAGAAAATTGAAAGTATGATCCATGAGTGTCATCATCATGTGGATGAATCTGATTGGAGGGGCAG
Seq A exon
GTAATGGGGCTTCAAATTGATGAGGGGAGTAAAAGGAGGAGGGTAGGAACTGTTAGGGACACTCAGGGCTAAGGAGGAAGACAAATCAACTTCCAGGGCTACAATCTGAGGGTAGAGAGTGGTCATACATAGGCTCATTTTCACTGGGGACCCCTGGGTTTTATACCTGCTAAATGCTCTTAGTCGTATGAGACCTCCACACTGTGGAACAGCAGCTCCTAGGCCTTAATGAAACTACATAATTTTATTCTTATGTTAACCCTTACATTTTGTAAACATACAAAAAGACACACACACACTCACACACATAAATACCGTTGATTTGCCTCTGTGTATTTTCTGTGTACCATTGTGATAGAACCTGGTGCAGGATCCCCTGGAACTGCAGCTATAGACAGTTGTGAGCTGCCCTGTGTGTCTTAGCAATCAAACTGAGTTCTCTACTAAACAAAACTAGAGCTGTTATTGCCAAGACCCCTATCTAGATTTTCTTTCTTCTTTGTTGTTGTTTTCTGTTTTTTCATTTTTATTAGATAGTTCATACATTTACATTTCAATGTTATGTCCTGTCCTGCCTCTTCCATCCCACTTCCCACTCCCCCTGTTTCTATGACGACTTTCTTAATACATAATATGATGCAATATAATAATGTATAATATAATATAATGTATATGATACAATATAATAATATAGTATAAAATAATAATGGATCAAAGACATTTAGAACTGGAACTGTGACCATGCTCCCATGTAATCACCTTCTGTACTGTTGTTTTTACATCGATACACATGTGAAGGACAGAGATTGTCCTCATCTCACTTCCTGTGCCCCACACGTGTGGAGCTTAGGGTGTGGTGGTCAGAGACAATGTCGACTGCTAGTTATGTTGTACCACCATGGGGTTCTAAGGCCTGAGCTCAGGCAAGCAGGCCTCCCTGTGGGTTCCAGCCCATCGTCCCTCTGTTCTGGAGACTCCACTCAAGCAAGTCCATGGTGTGCTTTATTTACTGTCTTTGTGCACACTGATCCTCACACTTGTAGGCAAGTGAGCTTTGCGGATCCCCTTATCCCAAGATCAGCAGTCAGGTTTTCAGGACAAATGCTTTACCAATTGAGTTTTAACAACTACCCCAGCCCCTCATTCCTTTTTCTCTGTGTGTGTGTGGGTTCTTACCATGAACCCCCTTGCTCATCGTCCCTCCTCCTCTTATATGAGGGTTCACCCCCACCCGTTTGCCCACTCCTTCCGGATTCCCCGCCTTAGCATTCCGTTCCACTGGGGCTAGAGCCTTGGCAGGACCACGGGCTTCTCCTCTTATTGGTGCCCAACAAGGCCATCCTCTGCTACATATGCAGTTGAAGCCAGGGGTCTTTCCATGTGAACTCTTTAGATGAACGGACATCTGGGTTCTCTCCAGCTCCTGGCTATTGTAAATAAGGCTGTTGTGAATGTAATGGAATATGTTTCTTTGTTTTATGTTGGAGCCCTTTTTGTGTATATGCACAGGAGTGTGTAAAGCTGGGTCCTCCAAACAGATTTCCAGAGTTGTCCCAGCTTGCTCTCCCACCTACAAAGGAGGAGTGTTCCTCCTTCTCCAAATCCTCGCCTACCTCTGTTGCCTGAGTTTTGATCTTAGCCATTCTGACTGGTGTGGCATTGAATCACAGGGTGATACTGATTTGCATTTTCTCTGATGACTAAAGATGTTGACCAGTCCTTTAGGTTCTTTTTGGCCATTTGATATTCCTCAATTGAGAATTCTTTGTTTAGCTCTGCTCCCCATTTTGTAATAGAGTAATTTGATTCTCCGGAGTCTAACTACTTGAATTCTATGTGTATATTGGATGTAAGCCTTCTATCAGATGTAGGAATCATAAAAATCTTTTCCAATCTGTTAGTAGCCATTTTTTTCTAATGACAGTACTCTTTGCCTTACAGAAGCTTTGCAATTTGATGAGGTCCCATTTGTTGATTCTTGATCTTGGAGAATAAACTATTGCTGTTCTGTTCAGGAAATTTTCCCAAGTATTCCAGGCTCATGTATTCTAGCTCTTCCCCATGTTTTCTTCTTTTAAGTTGAGAATATCTGGTTTTATGTGGAGATCCTTGATTTGCTTGGATTTTAACTGTGTACAGGGTGATAAGAAAGGTTTGATTTGCAGTCTACATGCTGAGTGCCAGTTGATTCAGCACCAGTTGTTGAAAAAGCTATCTTTTTCCCACTAGATGGTTTTAGTTCTTTTGTTAAAAATCAAGTGACCATAGGTAGGTGTATGGGTTCATTTCTGGGTCTCCTATTCTATTCCATTGATCTACTTGCCTATCGCTGTACCAGTATCATAACATTTTTATCACTATTGCTCTGTAATACAGCTTAAGGTTAGGGAGGGTGATTCCCCCAGAATTTTTTTTTTCTTGTTGAGTATAGTTCTCAGGATCCTGTTTTTTTGTTAATGCAAGTGAATTTCCAAATCGCTCTTTCTACCTCCATGGGGAATGGAGTTAGAATTTTGATGGAGATTGCGTCGAATCAGTAGATTGCTTTTGGACAGATGCCCAATTTTATAATGTTAATCCTGCCAATCTGTGAGAATGGGAGATCTTTCCATCTTATGAGATCTTCTATTCTTTCTTCAGAGACTTGAAGTTCTTACCGAACAGGATTTTCACTTGCTTGGTTAGAGTCACACTGGGTTATTTTATTTTATTTGTGATTATTCTGAAGGTGTTGTTTCCCTAATTCCTTTCTTAGCCTATTCATCCTTTGAATAGAGAAAGGCTACTGATTTGTTTGAGTTAATTTTGTATCCAGCCACTTTGCTGAATTTGTTTAAGGGGGCATCCTTGACTACTCCCTGATTTTAGTGGTATTCCTTCAACTTTCTCTCAATTTAGTTGGATGTAGGCTATTGGTTTGCTGTATATTGCTTTTCCTATGTTTATAGTAAGCTTTGAATTCCTGATTTTTCCAAGACTTTTAAAGGTTAGCACCTCATTCTTATATCCTGTCTTTATGGTTGAAGGGGAATCGATGACACACCAGCATATTTTCCCTAGTTCACATGCTTCTTGATCATTTTGTTATTCTAAGATGTTAATTAGTCTTTAAGGTGGAGCTTCATATAAAGAATACAAGAATGAAGTTTAGTTTTAAAATATTCTTCTGTTCATTGAATATTTTCTTTAAAAACACTGAATTGTCCAATGGTAAATTAGTCTTTAAGGTGGAGCTTCATATAAAGAATACAAGAATGAAGTTTAGTTTTAAAATATTCTTCTGTTCATTGAATATTTTCTTTAAAAACACTGAATTGTCCAATGGTAATTTTTCATTCTGTCAGTCCATTTATTCCCCACATGTAACTTAGATATCCCCTGTGTAGAATACACGTTCTAATATCTCTCAAGATCTTCCCATTTGTAAAACTTCATTTCTCTGCCCAGTCAAGCTTCCTTACATTCTATAAATTTAAATATAACATGAAATGAACATTACTCTTTGGAACCCTCCTTTCATTTTACTGAAACTCTATGAATCTCAAGCAAGGCAGCTATGCCACCATAGGTTATTACCTTGTAGCAATATTTACCTGATTTTGGTGTGAGTCCATGGGCACATTGATCAATATACGGCAAAGCATGAGGTCCTGGTTTCTATACCGAGTATAGAAGTGTTACATATGGGCATAAAAAATGAAATGTGAAAATAAAAATAAAAGAAAGTATTGAGGACTGAGGGCTTATATTTTGTTCACTGTTAAAAATGTACATAGATGCAAGTGACCGGTAAAATTGCCACTTACCTGTTGATTGTGACATATTTTGTTTAATGTAGGCCACAATGGGTTGCATGATAATTACCTTTAATTTTGTAAAGTGCTAAAAGTATTGCTAATTATAGTTGTAAAATAATAAAAAGGATAAATGACCTTCCATTCTTAGAGAGGGTAAAATGTGAATGAAAATGAAGGTAACCACAATGGATAAGATAGGAGGATTAAGAAATGTAAACTTCTTTTATATGAATTTTTTTATGTGTACTGCTGATAAAATCCTGTTTTTCTCTCACAGAATAGTTCTGTTTGTTATCACTAGGAAGAGAAATCATTACCATGATCAGGAAATGCTGAGCTCTCAGGAGCTGGAAATGCTTGTAGTGTTGTAGCAGATTTCTTCCCCATTCGAACTGAAACATCAGAGTAGCCCCTATTAAGATATGTTTAATGTTCATCCCTTGGATGGGGACATGGAGTCATGGAGCTCCTGAAAATACCGAGGAGTAACTAGTAAGTTCCAGATATTAGAGTATGACTTAAAATCAAGCTGAGATCAATTTGGGAACTTTTCTAGGATTCAGACAGGCTGCTTTGAGCAGCGAAGAAGGTCAGGATAGAACACCTGCCTTAAATAGGAAGAGTCATGTACCTATCCCTAGCACAGTAAATGAACATTCGAGTAGACCTCAATAAATAAGAACATTGTAGTTACTTTCTTCCATCAGATAGAAATCACCTTCATATTATGTAGTACTTACAGGTGATGATAGTCTTACTGGGAATTCAGAGATGTTGCTAAATGTGTTTTCAATTTGCAG
Seq C2 exon
GACATCGCTGCATTATGCGAGTGCCCACAACCATCCAGATGTAGTGACACTGTTATTAGAAAATAAGTCCAACATTAACATCCAGGATGATGAAGGCTGCACACCGTTGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059091:ENSRNOT00000078734:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PU(6.1=2.3)
A:
NA
C2:
PF0002325=Ank=PD(90.9=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]