RnoINT0116059 @ rn6
Intron Retention
Gene
ENSRNOG00000002930 | Ppl
Description
periplakin [Source:RGD Symbol;Acc:1305511]
Coordinates
chr10:10682488-10683908:+
Coord C1 exon
chr10:10682488-10682638
Coord A exon
chr10:10682639-10683824
Coord C2 exon
chr10:10683825-10683908
Length
1186 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CAGTATCTCTTGCTTCACAGAAC
3' ss Score
7.61
Exon sequences
Seq C1 exon
GGCCCAGAGCCTGCAGAGTGCCAGGGATGCCTACAGTGAATACTGCCGAGGTTATGACCATGTGCTTCAGTTCTTGGTCAAGACTCCCAGTTATGAGCCCCAGGAGACAGACAGCCTCAGCCAGATGGAGACCAAACTGAAGAACCAGAAG
Seq A exon
GTAAGATGGCTGCTTCTACTATGTGATGTATGTTTTGGAGGATCAGAAGTCCTCAAGGCCTGGCTGGAGACACAGGTCAGCAGTTAAAAGCACTGACTGCTCTTCCAGACATGGTGGCTCACAACCATCTGCAATGGGATCCGATGCCCTCTTCTGGTGTGTCCAAAGAGAGCTATGGTGTACTCACATACCTTAAAAAAAAAGTTCTCAAGGCCAATGGGGCAAGGCAAAGGAAGGGGCCACAGCTCTCAGCATCCTCTCACAAGCACTGCATGTCTTGCTCACCCCTTTCCTCTCAGGGCTCTTCAAACAGGACCTGGCCCAGCAGATACTCATGTGGCTTGGCTATATGGTGCCCCATGACCAAAACACGGGGAACCCTGTGGGGAAGATCCCATTATCAAAGTTGGGCTTCCCGATTCCTCAGTGCCACTCAGAAATCCAGTGGCTGGACTTTTTTTTTTTTTTTTTGGTCAGAAAAGTGCTTAAGTGCTTGCTATGCAAACATGAAGACCTGAATTTAAATCACTAGAACCTACCTAAGAAGTCAGGCATAGCTATGCAGGTCTATAGCACTGAGCAGAACAAGAGACAAATGGATCCATGAAATTCATTGACTGGCAAGCATAGCCAAAGAGATTGATTTCCAGGTTCAGTGAGAGATCTTGTCTCAAAAAGTAAGTGGAGTACAGAAAAGACAGGGTGTAGACTGTTAGTCTTTGTATGTGCACACACCGAGACGGACAGACAGACAGATAAGACAGACAAATGACTGACTGACTGACTGACTGACTGACTGACTGACTGACTGACTGAGACAGAGGGAAACAGAGAGAAATCCAGTGCATGATATTTTATGTGCTGTCCTTTCCTGGACTTGTTTTCTCATTCTCAAACAAGTTCCTCAGACTTGGCTCACAACCTCACCGAAGGATTACATGCTCTATCAGAGCAGAGCCTGGCATTTCAGAGCACACAATAAACACCTGTTTCCTGGCACAGATAACCATCTTCACGGCCCTTGCTCCAGGCCTTGGCATTGCCCTTTGTGGTGAACAAATGTATACAAGAAAGCCACCCATTATACTTTGAACTGTAGCATGTTGACTTTCGGTTCTAAGGACTCAGACTTCTGGGGAGCTCGTGTGTGTGGTTGTTTTGGTTCCCAGTATCTCTTGCTTCACAG
Seq C2 exon
AACTTGCTTGATGAGATAGCAAGCATGGAACAAGGGGCGCAGAAGGTCTACGCAGACTCCCAACAGTACCAGCAAGCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002930:ENSRNOT00000004026:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.392 A=NA C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGAGCCTGCAGAGT
R:
ACTGCTTGCTGGTACTGTTGG
Band lengths:
230-1416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]