RnoINT0118582 @ rn6
Intron Retention
Gene
ENSRNOG00000000852 | Prrc2a
Description
proline-rich coiled-coil 2A [Source:RGD Symbol;Acc:1303025]
Coordinates
chr20:5143942-5144377:-
Coord C1 exon
chr20:5144292-5144377
Coord A exon
chr20:5144176-5144291
Coord C2 exon
chr20:5143942-5144175
Length
116 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GCTTCTTCTCCGCTCCTCAGATG
3' ss Score
9.18
Exon sequences
Seq C1 exon
CCACAAGCCGAAAGAGTTACCAGCCTGGCTCCATAGAGCCCTGGATGGAGCCCCTGAGCCCCTTTGAGGATGTGGCAGGCACAGAG
Seq A exon
GTGAGTAGACACTGGGAAGGGGTTGGCAGCCAGGGTGAGGGTTTATTGAGTGTTGGTTGGTATATGACGCCTCTCAGGTGCCGGGTGTTTTACCTTGCTTCTTCTCCGCTCCTCAG
Seq C2 exon
ATGAGTCAGTCTGACAGTGGGGTGGACCTGAGTGGAGGTTCTCAGGTGTCATCAGGTCCCTGCAGCCAACGAAGTTCCCCCGATGGAGGACTTAAGGGGTCAGCAGAGGGACCCCCCAGGCGGCCTGGAGGACCCTCACCCCTAAAGGCTGTTCCTGGTGAGAGTTCATCTGCCTCTGAACCCTCCGAACCTCATAGGAGACGGCCACCTGCTTCCCATGAGGGGGAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000852:ENSRNOT00000001133:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGCCTGGCTCCATAGAG
R:
GGAGGGTTCAGAGGCAGATGA
Band lengths:
255-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]