RnoINT0118685 @ rn6
Intron Retention
Gene
ENSRNOG00000047969 | Prss21
Description
serine protease 21 [Source:RGD Symbol;Acc:727870]
Coordinates
chr10:13215343-13216243:+
Coord C1 exon
chr10:13215343-13215508
Coord A exon
chr10:13215509-13215959
Coord C2 exon
chr10:13215960-13216243
Length
451 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
GCACTCTCCTTCTCTGGCAGGGA
3' ss Score
8.5
Exon sequences
Seq C1 exon
GACCCTGCGGTCACAGGACCATCCCTTCACGTATAGTGGGTGGCGAAGAGGCCGAGCTTGGCCGCTGGCCTTGGCAAGGGAGCCTGCGTGTATGGGGCAACCACTTATGTGGCGCAACTTTGCTCAACCGCCGCTGGGTGCTTACAGCTGCCCACTGCTTCCAAAA
Seq A exon
GTGAGTCTGGAGTCAAACCCTGGCAGCTGAGGGGTGGGAAAGTTAGTATAGTAACCTTGGCCCTGAATTTGACACCTGGGTAAGCATTTTAGTGTAGCCTCAGGAGTAGCTGTGATGGGTTAAATCGGTAAGATTTTACATTAATGCCCCTGGAGGGAACCCTCTTCCAGTTATTCTAGAATGTTCTTTTAGGACATTCTCATTCCCTTTGAGTGTTTTGACTGCTCTTCCTCTTTCTTCAAGTCCTTCCCAAACATCCCCACACTAGTTTCCACGTTTGCTCAGCTCCTTTGGGGACTACACAAGGGGCTCGCCTTCTGTCTTTAGGACTGCGCCAACCGATGACAAGACCACTGGGGTAACCTCTCTTCTGCTCCTTCACTCGCAGTACCCGGGAGCAAGGATTGAGCTGAGCTCAGGAGGCTTGAACTGCACTCTCCTTCTCTGGCAG
Seq C2 exon
GGACAATGATCCTTTCGACTGGACAGTCCAGTTTGGCGAGCTGACCTCCAGGCCGTCTCTCTGGAACCTACAGGCTTATTCCAACCGTTACCAAATAGAAGATATTTTCCTGAGCCCCAAGTACACGGAGCAGTTTCCCCATGACATAGCTCTGCTGAAGCTGTCATCGCCTGTCACCTACAGTAACTTCATCCAGCCCATCTGCCTCCTGAACTCCACATACAAGTTTGCGAACCGAACTGACTGCTGGGTGACCGGCTGGGGGGCTATTGGAGAGGATGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047969:ENSRNOT00000073065:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=78.6)
A:
NA
C2:
PF0008921=Trypsin=FE(40.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTATAGTGGGTGGCGAAGA
R:
TGTGGAGTTCAGGAGGCAGAT
Band lengths:
358-809
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]