RnoINT0118760 @ rn6
Intron Retention
Gene
ENSRNOG00000033690 | Prss41
Description
serine protease 41 [Source:RGD Symbol;Acc:1584711]
Coordinates
chr10:13187254-13187461:-
Coord C1 exon
chr10:13187377-13187461
Coord A exon
chr10:13187281-13187376
Coord C2 exon
chr10:13187254-13187280
Length
96 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GCCCTCTCACTTCCACCCAGGAT
3' ss Score
7.65
Exon sequences
Seq C1 exon
GTCTTTAGAGAGGCCGCCATGGGTGTACAGGGCCCAATGCTGCTACTGCTGCTGCTGGTGGTGTGCGTGATGCTGGGGGAGCCTG
Seq A exon
GTGAGCTAAGGAGATTCATCCACCAGACTGGGGGGTGATGGGGGATTGTGGGAAACTTGGAAGCTCATTGAAGCTCGCCCTCTCACTTCCACCCAG
Seq C2 exon
GATCGCGTGAAGAAAACCAGGCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033690:ENSRNOT00000007039:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTTAGAGAGGCCGCCATG
R:
CTGCCGCCTGGTTTTCTTCA
Band lengths:
112-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]