RnoINT0118761 @ rn6
Intron Retention
Gene
ENSRNOG00000033690 | Prss41
Description
serine protease 41 [Source:RGD Symbol;Acc:1584711]
Coordinates
chr10:13187136-13187280:-
Coord C1 exon
chr10:13187254-13187280
Coord A exon
chr10:13187169-13187253
Coord C2 exon
chr10:13187136-13187168
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TCTCTACTCCTCCCCCACAGGCC
3' ss Score
11.56
Exon sequences
Seq C1 exon
GATCGCGTGAAGAAAACCAGGCGGCAG
Seq A exon
GTAAGGAACTGTAGTCCCTGTGAGAAAACCCTAGAGAGGCCAGGCATGAGGAGGTCGCCTCATCTTCTCTACTCCTCCCCCACAG
Seq C2 exon
GCCTCAAGAATACAGACATCAAGCTTCTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033690:ENSRNOT00000007039:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGCGTGAAGAAAACCAGGC
R:
TTGAGAGAAGCTTGATGTCTGT
Band lengths:
59-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]