RnoINT0120791 @ rn6
Intron Retention
Gene
ENSRNOG00000049034 | Ptrh1
Description
peptidyl-tRNA hydrolase 1 homolog [Source:RGD Symbol;Acc:1310165]
Coordinates
chr3:11812001-11812677:+
Coord C1 exon
chr3:11812001-11812066
Coord A exon
chr3:11812067-11812457
Coord C2 exon
chr3:11812458-11812677
Length
391 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGTGTGAATATTGCCCACAGGTG
3' ss Score
8.67
Exon sequences
Seq C1 exon
ATGCGGCGGAGTTGGACCTTGAGCCGGCAGGTTTCTGAGGCTCGGTTCCCCGGGAAGCGGTGGCTG
Seq A exon
GTGAGTGGGACACAGGGACTCGGGCTTGGCTCCTCTGCTGCGGTTACATTTATGTGTATGTGTTGTGTGCTTGTGCCGGCGGCTGTCAGAGGGCAACTTGGGAGAGGATTCTTTTCACCGTGTGGGTCCTGGGGATCGATCCTAGGCTGTCAGAATTAGCAGCAAGTACCCTTACGTTCTGGGCCATCTTTCTGGGATATTTGTCACTTTTTTTAAACTTATGTAAATAGGTGCAATATTGACTGGCTCCAAACTTTTAGTTTTACTCTTTAGCGGCACCCTCGGGCTGGTGGCGCATCCAGTAGTTCCCAGGCCCTTAAGCGCTCCTTCCCAACACTGACGCTTCTGTTTCCTGGCCACTATTTGGGTCCTGTGTGAATATTGCCCACAG
Seq C2 exon
GTGGCTGGCCTGGGGAACCCCGGAATGCCTGGCACTCGGCACAGCGTAGGCATGGCAGTGCTGGGGCAAATAGCACAGCGACTGGGAGTGGCAGAGAACTGGGCTCGTGACTCGCGCTGCGCTGCTGACCTCGCCCTGGCCCCATTCGGGGATGCTCAGCTGGTACTGCTCCGGCCAAGGCGCCTCATGAACGTCAACGGGCGCAGCGTAGCCAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049034:ENSRNOT00000039151:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.002
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=PU(0.1=0.0)
A:
NA
C2:
PF0119514=Pept_tRNA_hydro=FE(40.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAGTTGGACCTTGAGC
R:
CTTTGGCTACGCTGCGCC
Band lengths:
278-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]