RnoINT0121148 @ rn6
Intron Retention
Gene
ENSRNOG00000006709 | Pzp
Description
pregnancy-zone protein [Source:RGD Symbol;Acc:628643]
Coordinates
chr4:161827466-161834239:-
Coord C1 exon
chr4:161834176-161834239
Coord A exon
chr4:161827609-161834175
Coord C2 exon
chr4:161827466-161827608
Length
6567 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
GAATCTTCTTTATTCTCCAGTGA
3' ss Score
6.68
Exon sequences
Seq C1 exon
ATCAAAGCAAGGGGAAGCATCTTTAACTCAGGAAGCCACGTGTTACCGCTTGAACAAGGAAAAG
Seq A exon
GTAAGCATCTTTTGCTTTTTGTTTTGATTTGTTTTAATGTCCTCTCATCTTGCCAAAACTCGGCGACCGGGCAAACTGGAGCCTCTCTCACATTACAGGAAGTGCATGGCAGTCCTCTATTATTCTGTGAGGAAGCTGATCAGAACATTTTTGGATTTTAGGGTTTTCTTTCTGAAGTAAAATATATTAATTTCGGGGTTGGGGATTTAGCTCAGTGGTAAAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCCAAAAAAAATATTAATTTCATAATTATTTTCAAGAAGCAAAAAAAATCAAAATGTAAAAAAAAAATGATGGAAGAAGATTTGTCTTCATGAATTTATGTGTTGGATCCCTACTGCTGCCATGATGGGTTAGCACAGGTTTCCTGGCACATAACAACACCAATTTCTAATATTTCTGTTCGGAAGTCCCACTGGGTTCAAGTCAAGTTATTGGCAGGATTGCCTTAGATCTTGAACTTTAGAGAAGGCCCAATGTTCTTGCTTTTCCTAACCGCCTCCACCACTCCCTTCCCTTCCCTTCAAAGCCAGCAAGCAGCACTCCATCCCCAAACCTCGCCTGCTTGGCTCCCTTTTATAACCACCGTTATAACGACACTGACTCCACCTGGATAATTCAAAACTATTTTCACATCTCGTGGTCCTGGCTTAACATCTGCAAAAGCTTTACTGCCATATAAAATAACATGCTCAAAGATTTCCAGGTCTAGATATCCAGGATTAGAAGTCTGCTTACCACAAGCATTTCAAAATCTATGTGTCCATCCAACAAGTCCAATTCAGTCATCAACAAACCCCTGAGTCCTTTCCTCAGGCCCCCAAATCTCATATCATATCATATCATATGCGCAAAAACAGTTCCAAATTAAATCATCTCAAGTCATCTAAAGTAAGCTTCGAGGCCTTTTATACAATTAATGCCAGAGTGAAAAATCATCTGTCTGGAGAGAGATGAAATCCATCCAAACAGCCGCAGACTCCAACAAAGACCATCTCTGGTTGGTGCCTCTGTATTCCTAACTTAACTCTGCTGTGCAAATCCCTTCCCTTCCCACCAAGCATCGAATGTGCACACAGCTGCTTTTGTGTCCTGTACTTAGAGCAATCAAATGCTCTCCCTTTATCTGCCCTCTCTGTCCGTTTAAAGAAACGGTGTCTCTTTTAGAATAATTCCTCAAGAATCTTGTCATCTGCCTGCATGCCACAAAGATTTTATATATCCTACTAGACAAAAGTTTCTCCGTAGATGTTTCCTGGATAATTCTACCTCTCATTTTGGCTTTTGCTGAGGGGAAGGGGAACTCTGTGAGTCATACTTAGAGCCTCTTCAAAGGCTTTGTTGCTGAGCATGGTGGCATTTTCACTTGGTTATGCTGTTAGCAGGAGGGGCACAAAGTTTCTCTCTCGAGCCCAGAAAGTGCTCTGTGTCCCTTAGAAGCTGCGTAATGTGAGTTTTCCGAAACCATTTTTTCTCACCAAATCCTTCTTGCTCTGTGGCGAACAAGTCTCGGTTTTCAGTCCTACCAAATCTTACTGCACATAGCAGGAAGAAGCCAGGCTGGGCACTGATGCTTCTCTTAATCTTCCCAAACCATTCTCTCTCTCTCTCTTTTTTTTAAATTTATTATATATTTCTTTACTTACATTTCAAAGGTTATTCCCCTTCTCAGTTTCCTGTCAATAAGCCCCCATTCCCTCCCCTTCCCTCGCCCTCCCCTATATGGGTATTCCCCCATACATCCCCCTTATTGCCCTCTCCCATATTCCCCTGCACTGGGGGGTCCAACCTTGGCAAGACCAAGGGATTTCCCTTCCACTGGTGTCCAACAAGGCTATTCTCTGCTACATATGCAGTTGGAGCCCTGGGTCAGTCCATGTATAGACTGTGGTTTAGTCCCTGAAAGCTCTGGTTGGTTGGCATTTTTGTTTTTATGAGGTTGCAAGCTCCTTCAACTCTTTCAAACCTTCCTCTAATTCCTCCCAAGGTGGTCCTGTTCTCAGTTCGGTGGTTTGCTGCTAGCATTGACCTCTGTATTGGACATGCTCTGGATGTGTCTCTCAGGAGAGATCTGTATCTTGTCCCTTTCTGCAAACATTTTTTTTCCATCAATCTCCTCTAATTTTGGTGGCAATATATATATGGGCCACATGTGTGTCAGGCTCTGAATGGCCATTCCTTGAGTTGCTGCTCTAAAATTTGCTTCCATATCCCCTCCTATGAATATTTTCCCCCTTTTAAGAAGGAGTGGGAGCATCTGCATTTTGGTCATCCTTCTTGAGCTTCCTGTGGTCTGTAGATTGCATCTTGGGTAATTTGAGCTTTTTGGCTAATATCCACTTATGAGTTCATATCAAGTGTGTTTTTCTGTGATTGGGTCACTTCACTCAGGATGATATTTTCTAGTTCATTCCATTTGCCTATGAATTTCATGAAGTCATTGGTTTTTTTTCCATCTTTATTAACTTGGGTATTTCTTATTTATGTTTTGATTGTTATTCCCTTTCCCGGTTTCTGGGCCAACATCCCTCTAACCCCCTTCTAGCCCCTCCCCTTCTATATGGGTGTTCCCTTCCCCATCCTCCCCCCATTACCGCCCTCCCCCCAACAATCATGTTCACTGGGGGTTCAGTCTTGGCAGGACCAAGTGCTTCCCCTTCCACTGGTGCTCTTACTAGGCTATTCATTGCTACCTATGTGGTCAGAGTCCAGGGTCAGTCCATGTATAGTCTTTGGGTAGTGGCTTAGTCCCTGGAAGCTCTAGTTGGTTGGCATTGTTGTTCATATGGGATCTCAAGCCCCTTCAAGCTCTTTCAGTCCTTTCTCTGGTTCCTTCAATGAGGGTCCCGTTCTCCGTTCAGTGGTTTAATGATGGCATTTACCTATGTATTTGCTGTATTCTGGAGGTGTCTCTCAGGAGAGATCAACATCTGGTTCCTGTCAGCCTGACCTTCTTTGTTCCATCCATCTTGTCTAATTGGATGGCTGTATATGTATGGGCCACATGTGGGGCAGGCTCTGAATGGGTGTTCCTTCTGCCTCTGTTCTAAACTTTGTTTCCCTATTCCCTCCCAAGGGTATTCTTGTTCCCCTTTTAAAGAAGGAGTGAAGCATTCACATTTTGGTCATCCGTCTTGAGTTTCATGTGTTCTGTGCATCTAGGGTAATTTGAGCATTTGGGCTAATATCCACTTATCAATGAGTGCATACATGTGTGTTTATCTGTGATTGGGTTACCTCACTCAGGATGATATCTTCCAGTTCCATCCATTTGCCTATGAATTTCATAAAGTCATTGTTTTGATAGCTGAGTAATATTCCATTGTGTAGATGTACCACATTTTCTATATCCATTCCTCTGTTGAAGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGACTGCTATGAACATAGTGGAGCATGTGTCTTTGTTATATGTTGGAGCATGTTTTGGGTATATGCCCAAGAGAGGTATAGCTGGGTCCTCAGGTAGTTCAATGTCCAATTTTCTGAGGAACCTCCGGAATGATTTCCAGAATGGTTGTACCAGTCTACAATTCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAGTTTTTGATCTTAGCCATTCTCACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATAACTAAGGATGTTGAACATTTCTTTTTTTTTTTCTTTTTTCTTTTTTTTTTTCAGAGCTGGGGACCAAACCCAGAGCCTTGCTGAACATTTCTTTAGGTGATTTTTGGCCATTCAATAATTCTCAGCTGAGAATGTTTTGTTTAACTCTGTACCCCATTTTTAATAGGGTGATTTGGCTCTCTGGAGCCTAACTCCTTGAGTTCTTTGTATATTTTGTATATTAGCCCTCTATCAGTTGTAGGATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGATGTTTTGTCCTAATGACAGTGTCTTTTGCTTTACAAAAGCTTTGCAGTTTTATGAGGTCCCATTTGTCGATTCTTGATCTTAGAACATAAGCCATTGGTGTTTTGTTCAGGAAATTTTCCCCAGTGCCCATGTGTTTGAGACTCTTCCCCACTTTTTCTTCTATTAGTTTGAGTGTATCTGGTTTGATGTGGAGGTCCTTGGTCCACTTGGACTTAAGCTTTGTACAGGGTTATAAGCATGGATCGATCTGCATTCTTCTACATGCTGACCTCAAGTTGAACCAGCACCATTTGTTGAAAATGCTATCTTTTTTCCACTGGATGGTTTTAGCTCCTTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCATCGATCTACCTGCCTGTCTCTGTACCAATACCATACAGTTTTTATGACTATTGCTCTGTAATACTGCTTGAACTCCGGTATGGTGATTCCCCCAGAAGTTCTTTTATCGTTGAGTATAGTTTTCGCTATCCTGGGTTTTTTGTTATTCCAAATGAATTTGCAAATTGCTCTTTCTACCTCTATGAAGAGTTGAGTAGGAATTTTGGTGGGGATTGCATTCACTCTGTAGATTGCTTTTGGCAAAATGGCTATCTTTACTATAGTAATCCTGCCAATCCATGAACTTAGAAGATCTTTCCATCTTCTGAGATCTTCCTCAATTTCTTTCTTCAGAGACTTGAAGTTCTTGTCATACAGATCTTTCCCTTGCTTGTTCCCAACCCATTCTTTACATTTGCTCTCCACATAGCTTCAGGATTCAGTTCAGCAACAGCTTCTGCCACTGTGCAATAAGAATGCCCCTCCTCCATCGCTCTCACTGGCTGCGGTTTATTTTTGTTTAATTATTATAATCATCAATACTTATTAGTCATGCAGGTTCATGGTTTCACAGTGATGTCTCCATGCATGGATGAAGCATATTTTGGCCTTCCTTATCTTGCTCATCCTCTTTCCCTCTCTTCCCTTTCATGGGTTCTTCTAGTAGTTTCAGTAGATCTCTTTTTCTGGCTTGCCTTGTCTACCATGATATCCTCCAGATCCACCTGTTTTCCAGAAGATGACATAATTTCATTCTCCTTCATGTGTAAATAATATTCCACTGTCCATATGTACCACATTTTCTTGCCCACTCGTGTAGTGATGGGTGCTTAAGTTGACTCGGGATATTGGTGGTAGTGAGCAGGGCTACAGTAAGCGTGGATATTTATGTGTCTCATTTCAAGCCCTCCTGATAAACTCTCCAGAGTGGCATAGCTGGCGAATATGATGCGTTTTCAGCAACTGCATTTAAAAGGTCCTTCTCCTCCACATCTTCATTAGCACTTGGATTGTTTGTGTTTTCCTTTTCGCCATTCTGACTAGAATGGAGTGGGAACTCAATGTAAATATGATTTGCATTTCCCTGATGGCTACAGACACTGTGTGTGTTTTATGTTCTTCAACTATGAGCTTCTCCACATCTTACACACGCCACTCGCCCATTTTATGATTAAGTTGTTTGTTCTTTTTTTCCTTATTATACATATTCTGTATCTCAATTCTCTGTTCGGTGAATAGCTGCAGAAGATAACCCCCACTGAGTAGGTTATGTTTTTCTCTTCTGAGCTTAGCTTGTTTACACAGTCACCCACTTCGGAAAGCAACTGTTCTCTAGTTGCTTTGACTTTCCCCATGAAGAGTAGTGGCTGCCTCTAACCATCTTGAATTGCCAAACACCTAGAATTACTTCTCATTTCTGTGTTTTTCTTGTTTGTTTATACCATGTTGAGTCTTCTCTAAGATGTCCACTATACTATGACTCTCACTCTGCAGACTTCCTAGAGGAAGTTTAGCATCATGATTCTAGCAGTCTAGTAGAAATGCAGTATCCCCTTCTGTAAAGGCAGGCTCACCGTGGGGTCCTTGGGTCTACAGTGCCTCTTCAGTCTCTGCTGTCTCACTAGGGACTGTGTTAGCAGTGTGTTTGAAATTTAAAAAAGGGTCGAGGGCTGGAGAGATGGCTCAGTGGCTAAGAGCACCGGCTGCTCTTTCAGAGGAGCGGGACTCCATTCTCAGCGCCCACATGGTGGCTCACAACCATCTGTAACTCCAGTTCCAAGGGATCTTATATTTTCTTCTGGCCTTTATGGGAATGGCACATATATGCTGCACATAGAAGCATGAAGGCAAAACACCCATAAAAAACAAAATAAAATATAAAAATTTTTAGAAATATATATACTAAGTGCTTTTTCATATTTAGCAGGGGGACAAAATTAAAGCTTTATCTATAAAAACATCATTCACTCATCATGCATTTATAAAGTACCACTGCATGCACATTCATCAAACATGCATTTATGAAGCACCACTGCATGTACAGTGCAAAGGTCCAAGTCTTTTTTTTTAACATGATACAAATATGAATTCAACTACAATATAAAATTAAGAATCCACTCCAAATCCATAATTCTGAATCTTCTTTATTCTCCAG
Seq C2 exon
TGAAAGGAGTAGTTTCCTTCCCAATTCGAGTGGAGCCAGGCATGGCTCCTGTGGCTAAGCTGATTGTCTACACTATTTTACCTAATGAAGAACTTATTGCTGATGTTCAGAAATTCGACATTGAAAAGTGTTTTGCCAATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006709:ENSRNOT00000009467:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(14.1=100)
A:
NA
C2:
PF077039=A2M_N_2=FE(31.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]