RnoINT0121830 @ rn6
Intron Retention
Gene
ENSRNOG00000026523 | RGD1309106
Description
similar to hypothetical protein [Source:RGD Symbol;Acc:1309106]
Coordinates
chr13:79856479-79861633:-
Coord C1 exon
chr13:79861492-79861633
Coord A exon
chr13:79857526-79861491
Coord C2 exon
chr13:79856479-79857525
Length
3966 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTCATGTGTAACCTTACAAGGAT
3' ss Score
4
Exon sequences
Seq C1 exon
AGAGCATTCGCTACAGGCTGCCCATTTTAGGCCCCAGGACTGCTGTTTTCCACAGGCTGCTGTCAGATGCCTACAAAACTCCTCAGGATACTCAATACTGTGCCTTTCCCAAAAAGAAAGGAATGAGCAAGACAGTGAAACA
Seq A exon
GTAAGTGAGTGGCCAGAACTCATTACCCCCAAACTTTCAGGAAAAAGGCCACCTCTCCAACCCAGTTTCTTCCTCTCATCTTGTATCTTCCGAAAGATGAGTCACTCTTTCCTTCCTATGTGCAGCTATTCTAGCTCTTATCACTTCCTCCTAAAGACAAAAATGGTTTAATTTACATAACTATAGATTTATTGATTAACACAGAACATGGTAAATGTGCCTCCTGTTATTTTGCTGAAATTTTTAATGCATCTTATATTGTAATAAATGATAGACAATCTTCTTACGAGTCATGGGTTTTCCGTGTAAGTTATTTAGCCCATCCCTTCAAGTAGGAGGACCAGGGATGACTCCTTGAGCCCTCTGTTACTTCATCTTATTCACAATAAGGGGGAAAAAAATCACCTTTTTTTCTTTCAGTTCATTTTATAGCTAATAGGGGACACTATGATGTCATAACTGGAAAGTGACACATGATTACGTGTTGTAATCTGTAGTCACAGGAACCACACCCCATCTCACCTTCTTTACTTCTTTATATATTGATCAGGTGCTCAGCAAATCTTTGTTTACGCATATCTACACCATACTTTTATGGTGAAGTTATTTTTATATGAAAATGCATGCTTTCTGGTCTATGCTGATCTGTATGTACATAATGTGTGGGACACAAAGGAAAATTCCAAGTTTGCAAATGTTATGTATTTGGTCATATATTTTCTGAGCCAAATTTCAAGAGGCTTCATAAAAACAAACAAACAAACACCCTCTGTTTCTTAGGAAGCAACTGCCTAGTGGAACGGCAGACCCTGAGTAGATGCTAGCCCAGCCTATAGGACAGCCTCTGTGCCAACTGTTTTTTTTTTTTTTCTTTTTTTGAAGAATGGAGCTAAGAAATCTCAGATCAATGAATCAGTGTCCAAATTTAACTCAACAAAACAAAGAAAAAACAGACAAAACCTGTTTTGTTGTCTTATATTTGTGGTAGACTATGATTCCTGTTTTCACTGTAATTGAAGTTCCAGAACTTCAAAAATAGTCTCCATGATTTTTATCATTTCAGACAATTGAACAGCACAGAAAAGCTTTGTTGTTGTTTGTTTATGCATACATCAGTGAAGGGTCTTGGGGGACTCATAAATTAGGGGAAACACTTCCCTCATGAACAGTTATCTGAGGTAACATGAATATTATATAGCTTAGGAGATAAATTGCTTCTGAAATCTCATTAAGATGGCCTTATCTAGAATACCTCAAAACTATATCATCAAGGATAGCATTTTGGTATTTGATAGTATTTTGACAGTGGGTATTATGGTTCAGGTACTAAATACCCATAATGGCCACAGAGTAAAGACTTGACCACTAGCTTTTGAAACCACCAAAGGGTAGTATGATCTTGAAGAAATGGAGCCAAGGTAGTAATAGGTGACAGGTGACTCATCTCACCTATACCATACTTTATTTCTCTTGTACTGTGGAAGGTTATATCATTTGGGGGCATGCCTTGAGTGGGACAATGGGACTCTGTCCTGTTCTCCCCTCCCTTCTCCACCACTTTCTTTCTCCCCCTCTTTCTCCCTCTCTGTATGTTTCTTATACTATTTGGTCTTGGTAACATTTTACACTCTTTAATAGTTAAGAACCCTAAAGAATTATAAAACGGGAGCTATATTTATTGATGTCTACCACATTAGAAATTAAATAATTTTAAAAAACACTTTTAAAAATAATGTTTAAAGCACATTCATTTGGTGTTGGAATATTTAAATTATCACATGTCATTTAGTCTTGGGAAAATTCCTACCATATTTGGGGAAGAATAAGAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATGTGAATAATTATGAACTTGAGAGCTCAAAAGAACTTCAAAGGCTGAAGGGTTCCAAGTCCACATTTTAAGACTTAATTCATATATATGAATATATTTTTTTCCTTTAATCTTCAGATCTCCAGGAAAGGGATGGTACAGTGATTTAACTCATGCCAAAACTAATATGGTTCCTTGGTAGATGATTTAGATGAAAGGCAATACTAGGTTTTCAACACTTATAATACTAATTTTTAGTATTAGCTTCCCTTTACTACATATGAACGTTGTAATTTTTCTCAGCTAGTGTCCCAGTGAGAACAGAAGTCTTCTACTCCCACTGCACTCTCATGTTTCAATTTGAATATGAGTGTTCACTGGTTTATACTTTAGTTTGTAGGAAATCTCCCATAACATAAGACCCAAATTTGATTATTATGGCCTCAGCACACTAGTGATGACCTCAGTAGTATTGCTAAATAGCCAACCAAGAAGAGTTTCTTTGTTACTTTGTTCCTACAATCAAATCCTGGAGAGTAATGGCACTGAGGGCAGAATGCCCCAAATTGGGATTTCTATCTCTAACACATATCCATGTACAACTAACCCACTGCTACCATTTTAATTCAAACTTGCAAAGAGATCTGCAGATATACTGGATGGCTTTTCTATATCAGTAATAAACTTATTTAAAATAAATCATCTTACCTGCATCATACTTTGCTTCCACTGTATTGCAGGAGCCAAATGGTTGACAGTGTCCCTATTGGCTCAACTGCCTCTCCCTTCGAGGCAATGATATGAACCTGTTGTTATTTCACCTCCTGACCATTCTTAAGTGTCATCCCAAGATCTATCATGAATAGGCCAAGCAATGTCTTCATTGGGATAATGTTATTCCTATGCCAAAGCCGTGTGTAGTTCAGATTAAATTTGAAAAATTGATAATCTTGGGTAGATGTTTTTATTTCAGAATGAAAGTCTGATTTTGCTTTAAAAAAAAACCCTCAATTACGTTAAAAATCTATAGATGTTAGTATATACACTTGTCCTTCTCTCACCCCAACAGGGAATTTAAAAACCAATCAGTCTGCATAATTCCCTTACGTTAGGAATGAAAAGAAATGCCATATTTGGCAAAATCTGTGCTGTAGTTTATATCCTGTTGTGTCTTATGTAATGCATGGCCAGGGTCACATCTGGTCCCAATTTTAATTCTGGGAAGTTGATTGGGCTTCCACTGCTGTGTTCTCTTATAAGGGTCACTTGTATTCTTCCCTTGATCATAATTATCGGGTGAGGAGAGGGAGAAAGACGGGGACGGGAAGACTGAAACTATTAGCAAGTTGCTGGCTCCCTGGCCTAATGGTCTTCCATGCAGGCCAGCTTCTGTTCATTATTTTAACATACATAACACCAGGTAGTCTCAAAGGTGCTCCATTCAGGTTTCACTTGGTACAGCTGTTCAGAGTTAGAACTGCCCAACAAAGGAAGAACCATGGGACTGCTATCTCTAAATAAACCTAAGAGCAAAACTACTAAGAATCAAGATTTAGGGGGTTGGGAAGCCAGTAGAGTGCTTGACTTGAAAAGATTGGAGTGGCAGCCCCAGAACCCACATCAAAAGCTGGCTGTGGCAACATGAAGCTGTTCTGCTGCTGTTCTAGAACTTTCTAATGCCGGGAAGGTGGAGACAGGCAGAGCCTTGGGGGTTGTTGGCCAGTCAGTCTAGCCTAATCAGGGAATTCCAGACCAGTGAGAGACACTTTCAGAAAACAAAGCAGATGGTGCCTGCACGTGCACCCACACATACATAAACAGAGAGGCAGGGTAGGGAGAGAAAATGATCAAGACTTAAGTAAAAGTGTGTGGCTTGGCTCTCATACAGGAGGCCATGGGTTCAATGTTGAGGATAGGGAGGAGGAAGACAGTGAAAGAAAGGATAAACTAACCCCTAGAGAAAACTGGGGTGATCAAACAGGTCTTCATCTATATTCTACTTAAAATCAACTTAATTTGGCATTACATTACACAACTCTCTTATAATTCTAATTGTAAATCTGTTCTTTTTTTTTTTTCATGTGTAACCTTACAAG
Seq C2 exon
GATAACAACACCTCATGCTGCACTGTATCCCTGCAGGAGCTACTCGGCTATTTGAGATATATTTCAAATAAAGGCAAGTCCATCCCTAGGCTTAATAACTATCATAAAACCACAAACTAAGATCCATAAATTTGGGAGTTTGAAGGCAGACTTGGTTATGTATTGTGATTCTGCCTTCTAAGGAGTTATCATTTCATTTAGAGAAATATAAATGTGCATGCTCCTATCACACACACACACACACACACACACACACACACACACACACACACACACAGTGCATGGAACATGAGTTACAAAAAGGAGCACCCAGCCATTTCAGCAATAACATCCTCCATATCACCAGTCGCCCTGCTGTCTGACGGGAACAAAGAAGCAATTATTGAACCTCTCCAGCAAGGCCAATGGGAGAGAAATAGCTATGTGTTATCGCTTGTTCTTTGTGAAGTCTTTGGCGAGACATTTTGTCACCTGGTCAGCAAAGTGCAGAAAAGCCAGGTGAAGCATGGATGGATATCAGTTATTTCAGAAGTTTACTGGGTTCATCAGCTAGTAAGAGCCATCCAGTGGGGATTCCAAGCTGTGAAAAAGGCTAGAAACTTTATTCCCTCGATTTGAGAAAAAGTGCATAAAGAGTACAAAATGTGTAAAATCAAGAAAAGGATCGTGGTAACACTGGTTAGCTCTTAAAAGTCAAGCAGAGTGGCTGGAGGGCAGAAAATGGCAGAGAGGTTTTTGCAAACTCCACCCTGACTTTCCTTTCGGGTTGTGAACTACTTCAGTGTTTCACTGACTCAAAAACAGAACAGGGTGAAACAAAAGACCTCTTTGAAAGTGCCAAGAAGCTAATGTAGCTTTGACACTGGAAACCTGATAAACCATCTGCAAAATTGTCCTGAAGACACTCCCACAGACGGACATAAACCTTGAGTTCTATCAAGTTCAAGCAAGTGTCCGGTCCAAAGAATACATTTTATCTCTGGCCTTCAGGAAGTTTTGCCATTGAAAGGCAAGTTCTGGCACCCAACAATAAACGGTTCATGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026523:ENSRNOT00000035815:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF150811=DUF4548=PD(27.9=95.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]