RnoINT0126442 @ rn6
Intron Retention
Gene
ENSRNOG00000002347 | Rgl1
Description
ral guanine nucleotide dissociation stimulator,-like 1 [Source:RGD Symbol;Acc:1308947]
Coordinates
chr13:69928434-69929885:-
Coord C1 exon
chr13:69929799-69929885
Coord A exon
chr13:69928467-69929798
Coord C2 exon
chr13:69928434-69928466
Length
1332 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CTTCCAAACATTTCTTCCAGGGT
3' ss Score
8.15
Exon sequences
Seq C1 exon
GGTGTGATGCAGGGCACCGTGCCTTACCTGGGCACCTTCCTGACTGACCTGACCATGCTGGACACTGCCCTGCAGGACTACATTGAG
Seq A exon
GTGGGTTCTCTGCACTAGTGGAGCCGGGCCTACAGCCTTCTCTTTGGCTGCATGGAGAAGTTTGTTTCTCTTAAGATCTATTGAGAGCCCACAATATACATGGCTGGGTGGTAACAAACCAAACCAAACCAAACACCAGAAGATGCAGAGAAGGTGAGAAGCCCATCCAAAGAGAGCACTGCTCACTAAGTAGCAATGGCTAGGAATGGCGGCGGGTGGGCAGACATGTGGCAACAGGTAAGTGATGTTAGATGATAGAGCACGGTTAGCTCCATGTACACAGACATGACTGCGCTGCCTTTTGAGGGCTGGGGTTTGAGCATTGGCACTACAGATGGATTTAAGGGATAATCCACCCCAGTACTCTGCCTGAATATGCTATGGATGAGGCAGATTAATGAATTTTCAAGGAGGTTCCCCTCATTCCGTTCTATAACAATTATATCACTGCTGCCTGCTTAGGAGTATGTGCCTGGATCCATGTCCTGCCTTCCTTTTGCAATGAAGAAAGAAGTAAAATCCATTCAAACAAGTAAACTGGTAATAGTAGCAATAAAATGTCAATCAGGAAAGGGTTCAATTTGAAAGGAGATTGGAAGGTTATTTATAGGGCTTGACTTCTAACTCGTCTCTGATGTCCTGGTTCAGTTCCTAACGATGGTAAACAAACATAAATCATAGGAACAAACAAAGCAAAACAAAAGCAGCCTGTCTGCACCCATCGCTGGCTCTCCTAGGAAGCCTGCTGTGCGTGTACTGTGGCGACCCATACTTCCAGGGGTTCTTCTGTGTCTCTTCACATCCTCTGCCTCAGCTTATCTCAGGAAACGCTCATCAGGGTTGAGCGAGTGCAGGGAGTGAGCAGAGACTGAGGAGTTAAGTCTACCCTTAAGTCTACCCTTAAGTCTACCCTTAAGTCTTCGTGATGAAGAATTGAAACTTAATTTCCACCATGCTGGGGAGAAGTGAGTCCCTCTGATAAATCATAGACAGTTTGGCTTCCAGCGTGAGTCAGTGGCCCTCTGTTTTGTTCGGCCGAGGGGAAAAGTGGAGTGGATTTTTTGCCCCTCACTAGCTTGGCAAACCTGTCTGGATTCTGACTCACGGCGCCTTCATCATTGCTGTTGTAGTTGGTTTCAGACATTTTAGGAGATGCTCCACCATAAATAAAGGGACCTTTTTCTCCACGGAAAGGAAGATTGCCTTGCTCCACAGTCACTGTGTTTATAAGATCATTAATAGTTACAACTTTCTTGTCCCTGACCTATTCACTGTGACCAGCAAAGGGTCCCGCAGCTCAGTAGCTTATGTTCTTCCAAACATTTCTTCCAG
Seq C2 exon
GGTGGACTGATCAACTTCGAGAAAAGAAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002347:ENSRNOT00000067135:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(12.6=100)
A:
NA
C2:
PF0061714=RasGEF=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]