Special

RnoINT0128073 @ rn6

Intron Retention

Gene
Description
ring finger protein 34 [Source:RGD Symbol;Acc:628636]
Coordinates
chr12:39167973-39170749:-
Coord C1 exon
chr12:39170342-39170749
Coord A exon
chr12:39168093-39170341
Coord C2 exon
chr12:39167973-39168092
Length
2249 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TGGATCTGTCGTGTATATAGGTA
3' ss Score
7.01
Exon sequences
Seq C1 exon
CACGTCTGCTGTGACTGCAAGAAGGACTTTTGCTCCCTTTGTTCGGTCTCACAAGAAAACCTCCGCAGATGCTCTACATGTCACCTACTCCAAGAGACAGCCTTCCAGCGCCCTCAGTTGATGAGACTAAAAGTGAAGGACCTGCGGCAGTATCTGCTCCTCAGAAACGTACCGACCGACACTTGTCGCGAGAAGGAGGACTTAGTGGATCTAGTGCTGTGCCATCGTGGACTGGGCTCGGGGGATGGCCTGGACTCAAGGAGTCTCAGTTCCTCAAGATCCCAGACTTCTAGTTTTTTTACACAATCCTATTTTTCAAATTATACACCCCCCTCTGCTACTGTGTCCTCCTTCCAGGGAGAGCTGATGGACAGAGAGGGCACCTTCAGGTCAGAAGTTCTCACACAG
Seq A exon
GTAGGATGGTATGGTTGATGACCCCGAGAGCCTGGGCTGCTCACTCTTGGCCACATGTGGCCAGGATCTTTAGTGCCGGGTGGCATCGGATGAACCTTAGGTCATATGCAGAGTAGAGATTCCATCCCCAGATGCTGGCATTGCACATTTCCCTGATGTGTATGTGGCTTTAGGTGCTAATACCCGGAATCCACTCTGACATAGTTCATGAGTTTCTTGTCCTTAGTTTCCTGTCTTGTGAAGTTAAATAAATTTACAATTAACTGTTGAAGTAATAATCAAAAGTGTTAGTGACAAGTAGTTAACTCAGTAATCATTTTACCTTGTTGGGGGGGAAATGGTTCTGATTTGTTTTTATTTATTTATTTTGAGATAAGCTCAGGTTAGCCTCGAGATCCCTATATAGCCACGGATGACTTTAAAGTAAGAGAATGTGTGTACACATCCTTACTTGCTCAGTTGTTCTCCATCTGATATTTTGAGACTGGTCTCACTGACCTGGCTATGCCTGCTGGTCCGGAAGCTTGAGGTCAGGCTGTTCCCATCACTGCTTCCCGTGATTCTAGCATTCTAAGCACGGACTTTTCAACCTGCGTTTGTGTGATTGTTGCAAATCCAAACTCACATCCTTGTGCTTTTGCTGCAAGCGCTGTTACCTCCGGAGTGCTAACCCCAGCCCTGGCTCAGCTTCCCGTCTTCTTAGCTCCTGAGGTCAGAGATCAAGAGTGTGCATCATTATGGCCTGGTTTTAAGGTAGTGCTAGGGACTGAACCAAGACTTTGTATACTAAGCCAGCACTCTTCACAATTGAGCCATGTCTCCAGTTACACAGTTTTTCTAATTCAAATAACACACACACAAAAAAATGTAGTGTATTAGAACACTATCCCAATAAGGTTCTCTTTTAAAGGATTTATTTATTTATTATATATAGGTACATTGTAGCTGTCTTCAGATACACCAGAAGAAGGCATCAGATTCCATTACAGATGGTTGTGAGCCACGATGTGGTTGCTGGAAATTGAAAGCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCCCAATAAGGTTCTTAAGCATCGTAGTTGAATAGCATGCAGGGCTTACAACTCAGTTTGCTGTGTCTGAGTGACTCTAAAATGCTAAGTTAAGTTGTGTGTGATGGTGGTGTAGTTCCATCTAAACTAGGGAGGCAGGGACAGCAAGGCCTCATGAGCTCAGGAGTTCACGGCAGCATGGGCCATTAGCAAGGCTCCCAATTTTACAAACATAACAAAGCCCTAAGACATAAAATACTGGGTTATTTTGAAATTGTTTTTTCCTGAGTTCAATTTCCAGCACCCATATGGCAGCTCACAACGGTCTTACTCCAGGTCCAGGGGGTACATCACCTCATACAGACATACATGCAGGAAATGCACCAATGCAAATAAAATAAAAACAAGTAAATTGTAAAAAAAAACAAAAACAAAAACAAAAAACAAAAATAAAAATCTTCTTAAAAAAGTAGGCGTGCCTCATGACTGGGCAGGGTAGTACACAACCACTCAACGGACAGAGGCAAGAACACTGATTTAGCTGCTACTCAGGTATTTGTAACTTAGAGAAGGCCAAGACCATAGTTCATGGTTTCCTCCATGAGAATCTGCATGATTCTATACCAGATTTGGATCTAGAGCACCATTTGGGGGACATGTGGGTGGCACAGTGCTGCAGTGTGCTACCTGTGGGACGAAGTGTGATGCCATGAAGAATGGCGGTGTACATCTACAATTCCAACATTGAGAATGTGGAGGCAGGAAGGAGAAGAGTTCGTACTAGCCCAGGCTAGACCTTGTCTCAAAAGAGAAAGTGTGGGAAAGATGTGGAAGAAGGTGTATAATCCACAATGGAAAACTCTTTAATTAGGGATTGTTAAAAACACTGATTTCTTGTCTGTGTATGTGAACGTATGCATGCACTTGTGCCCTGGTATGCGTGTCACATTCATGGGTGCCCTAGTGCCTGTGGAGTTCAGAACGGGGCATTGTATCCCCCTGGGTTGGAGTTAAAGATGGTTGTGGTCCGACACGTAGGTGCTGGGAACTGAACCCAGGTCGTCTGGCAGAACAGTAAGTCTCTTAACTGCTGAGCCATTCTCTTTAAGGGCAGGGAGGGTCTCACTGTGCGGTTGGTAAGTAGAAAAACCTGATTACAGATATAATTGGATCTGTCGTGTATATAG
Seq C2 exon
GTACAAAGTGAATTAGCTTCAGCAAACACGGATGATGAGGATGGGGAGGAAGATGACGACGATGATGACGATGACGACGACGAGGATGACGATGAACAAGAAGAAAACTTAGAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001331:ENSRNOT00000001799:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.132 A=NA C2=1.000
Domain overlap (PFAM):

C1:
PF148121=PBP1_TM=PU(15.9=8.1)
A:
NA
C2:
PF148121=PBP1_TM=FE(56.5=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]