RnoINT0129331 @ rn6
Intron Retention
Gene
ENSRNOG00000015701 | Rreb1
Description
ras responsive element binding protein 1 [Source:RGD Symbol;Acc:1310904]
Coordinates
chr17:27592203-27593599:-
Coord C1 exon
chr17:27593510-27593599
Coord A exon
chr17:27592367-27593509
Coord C2 exon
chr17:27592203-27592366
Length
1143 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
GTACCGACTGCTTTCTGCAGCAC
3' ss Score
5.69
Exon sequences
Seq C1 exon
GAAACGAAAGAGGAGAAGTCTTCCTACAACTGTCCCCTATGTGAAAAGGTCTGCACTACCCAGCACCAGCTGACCATGCACATCCGTCAG
Seq A exon
GTTTGTGCTTACTTTGGTATTATTATTATCCACTAACAGGATGGGTTGATTTTAATTAAATTAAATTGTCTAACAAATAAAAAGCTATGTTTAAAATTTAGAGTTTTAGCAATCGGGTAGTTATGAAGTAGTTTTTGCATTGTCATGTTTCTATGATAGCCTAAGACAGAGCATGTTTTTCAAAGATAGTAAACATTCAGTTAACTGATCACTTATGTTGATATAATGCTTTTTATTGTTTGTTACAATATTGACTAAGCCTCATAATGAAAGATTATGGTGCCCCCGCCCCCCTTTCTGGTTCTGTCTATGTGTGTGGAAGGAGAACAATCACGGGGACCTTTACATATAATCTTACACCACGCTGGCTTTGAGCTTACTTTGTAGCCCTTCCGTCCTAGAACTCATAGCAGTCCTCTGCCTCAGCCTTCTTAGTGCTCATTTGCAGGCGTCTGTCACCACACCTGGCTTTTTCCCCATCAGTATTTCTTAACAGGGTCTTGCCACGTAGTCAGCTGGCTGCAGCCCAAAGTCCTCACGTCCATTCCCGCCCTTTATGTAAATGGTGCCAGTGCACTTCCTGCAGCCGAGGAGTTCCTGGAGTTGGGATCATTTCCCTTATCATAGGATGTATCCTTGTCCCCTTCTGGCATTGCTGGTTTATGACAGACTGCCGGTGACAGAACAGTGGGAAATGATGATGCATTAAAATCATGAGGCTGCTAATGACACTGAGTCACTAAGGAAACTTGGATGTGGATAGAAATGTTCTTCATGTTTCAGAAGCATGAACTCCCTCACAGGTTTCTGTTCTCGGACAACCAGTTTAAGCCTTCAAAGTGGAGGGGGGGCTGTGGCCTCCCAGTGTGAAAGTCCTATTTGCGTCACATACTGGCTGTAGAGTTAAGACTCCTTCTGCACAGAAGAGTTAATAATACATGCGTTTGTCTACCCCGTAAACCTGCAAAGACTAGCTCTGAGTTTTGCATTGGAATGGAAGATAATACAATGAAAAGAAAAGAAACTTGAGGGGTGGGGTGGGGGGTTGGGGGGTAGAGAAACTTCACTGGTCTATACCAGTCTCCACATCTGTATTTCTAATGTCATCTTCTCAATGACCACTGTACCGACTGCTTTCTGCAG
Seq C2 exon
CACAACACAGACACTGGAGGAGCTGACCACTCATGCAGCATCTGTGGGAAGTCGCTGAGCTCTGCCAGCTCCCTGGATCGTCACATGCTGGTGCACTCTGGCGAGAGGCCTTACAAGTGCACAGTGTGTGGCCAGTCGTTCACCACCAATGGCAACATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015701:ENSRNOT00000060218:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.643 A=NA C2=0.436
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=PU(91.3=70.0)
A:
NA
C2:
PF0009621=zf-C2H2=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=47.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACGAAAGAGGAGAAGTCTTCCT
R:
CTGTGCATGTTGCCATTGGTG
Band lengths:
254-1397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]