RnoINT0130541 @ rn6
Intron Retention
Gene
ENSRNOG00000004155 | Samd14
Description
sterile alpha motif domain containing 14 [Source:RGD Symbol;Acc:1306138]
Coordinates
chr10:82823988-82825763:+
Coord C1 exon
chr10:82823988-82824009
Coord A exon
chr10:82824010-82825742
Coord C2 exon
chr10:82825743-82825763
Length
1733 bp
Sequences
Splice sites
5' ss Seq
GCCCTTCCT
5' ss Score
-25.05
3' ss Seq
CCCAATGACCCATTACCCAGGTG
3' ss Score
4.49
Exon sequences
Seq C1 exon
CAATAGACTTAGCCGTGGAGCC
Seq A exon
CTTCCTTCAAGTCTAGTGGCCATTGCGTGGGGGAAGGGCAGACAGGGCGCTTAGGGTTCTTCAGTACATGGTGAGCGAGTGACCTCACATGTAGTGTGTCATTTAATTTTCAAAATAACGTTGGGCGTACAGACAAGGGGTGTAAAGGGGCACATGCTGCTGTGACCTGCTTTAAAGATCCCGTGGAGCCCAGTGAGGTGGCGCAGCCATTAAAGGTGTTAGCTGTGCAACCCAAATTCAGTTCTGCTCATATGAAGGTGAAAGGAGAGACTCAACTCCACAGAGTTATCCTCCGACCTCCACATGTGCGCTCTGGCATGCACACCCATATCATACTTCATGCTCATACCCGCGCACGCACACACTAGTTATAATAATATATTTTTTGAATAGCATGAAAGCTTGAGTTCCATCCCAAATACCCACTTAGAAACTGGGCATCCGCTGTGTATGTGGTGGCACATGCCCTTAATTCCCGTACTTGAGGAGCAGAGGCAAACTCTGGGTTCAAGGCCAGTCTGATCTACATAGAGAGTTCTGGGACAGCCTACATAGAAAAATCCTGTCCAAAAATAAAAAAAAAAAGGCTGAGCAGTGCACACTTGGAACCCTAGTGCTGGAGAACGGAAGAAGGGGTTCCCCGGGGCTTTATGGACGGCCAGTGTAGCCATATCAGTTACCTCTAGGTTCAGTGAGAGACCCCATCTCAAAAACCCAGGTGGAGAGGGATCAAGGCCACCAACCTCTGACTTCTATGCATACACTTATGCATATATATGAATAAATATGAATGAATGAATGAGATGAATGAATAATTAGTGGTAGAATGGGACCCTAGAATACCTGGCTCTCAGTCCCTAGTCACTGCACTAAACCTCTGTATACTCAGTTCAGACACTTTACATTTTCTCCAAGTCACATATATACAGTCAGTGCCTCATCTACACCCACCACACACAAACACCACACACCCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAGCCTCCATGCCCTCAGCATTCTCTGTTGTGTGTACACACTGCCATTTTGAGAGATCACCCCACCAGGGCAGAGCTGTCTGCAGGCTGTGTGGCTGTGATGTGGAAAGCTGTCCGTGCTCCCAGCTTGATTTGAGTAGATGATTCCTGGGTACAATTCCAAGGGGCTCCTACCCATGGGATGCCACAAGGCTCCGGCTTCTCCTGCTTCCTCCCATCTCTGCCTTTCCCTCTTCCCTCCTGCCCATCCACTGGTCCTAGTCCCTGCCAGTATTGTTACCTCAGTCTCTTTGGACCATGTTTCCCCACCACAGCCTCTACACAGCCCCCACCCCACTTCCTATTCTCTGAGGCTGGCTCTTCACGGTTCCAGCCTAACCTTGGCAAGGTCCCACGAGGGTGAGCTTGCCTGGTGGGAGGGGGGCTTTTCTTTTCCTCTGTCCCAGGCTCCTCGATGATCCTTGCTTGTTTTTCTCCTGTCTGCTGAGGTAGCTGGGCGCTGCCTGGAGTGCTTCCTCATACGAAGACAATAAAATATTCATCTCTCCCACTGCCCAGAACCCAGAGGGGGAGGCAAGGAAGAAAACAGATGGAAAAAGGGTTTGAGGGGCCCTGGTGAGACCTGCCCTACCTTGCCTTGTACCCCCAAGCCCTCAGGAGAGCCTTAGCACTCTACACTGTGGCTGATACCCATTTTGCTATGTGACCCAATGACCCATTACCCAG
Seq C2 exon
GTGCACATGGCTGGATACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004155:ENSRNOT00000005519:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]