RnoINT0131859 @ rn6
Intron Retention
Gene
ENSRNOG00000010214 | Scrn2
Description
secernin 2 [Source:RGD Symbol;Acc:1307741]
Coordinates
chr10:84966989-84967654:+
Coord C1 exon
chr10:84966989-84967101
Coord A exon
chr10:84967102-84967480
Coord C2 exon
chr10:84967481-84967654
Length
379 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGA
5' ss Score
2.37
3' ss Seq
GCATCCCCACTTTTTCGCAGATG
3' ss Score
7.05
Exon sequences
Seq C1 exon
GACAAAGGCCTTCCAGGTCGCCTACCAGAGAACCCGGGTCCAGAGGAACAGATTTGACCTGAAGAGGGGGAAGTGGCGTTCGGAACCGAGTCTGAGGGTCTTGGAGGCAGAGA
Seq A exon
GTGAGAGACGGAAGCACTGAGAACTTAGAAAGGGTTGGACGGAAGAGAATCGCGAATGTGGGCATGCGCAGGAGCGTGGGATTTTTGGAGCCAGCATTAGTGCCTAGGAACTATTCTTACAGCCAGCCTGGGAGGGTTAGGACTCCAAAGCTGACGCTCTTAACTTGCAGAGTTTGCTCTGTCTCCCGACTCCAAGCCTGTTAGTGCACACACTGCACAGTGCTGTTGTCCCAAAGCGTCAGGCTTTTGACCCTATCTTCTCAGGGTGTATTGGCGGGGAGGGAGGGAGAGTGTCCTAGGCCCCACCTGTGGCCAAGATTGTGGAGAGATTGTGGAGAGGTGGCACTGGAGGGAAGTGAGCATCCCCACTTTTTCGCAG
Seq C2 exon
ATGGCATCATCGAGCCCCGACGCCCCTTGTTCCTGCGACTGCTTTGTCTCTGTGCCCCCGGCTTCAGCCATCCCAGCTGTAATCTTTGCAAAGAACTCAGACCGGCCCCGAGATGAAGTCCAGGAGGTGGTGTTTATACCAGCAGGCACTCACACCCCTGGGAGCCGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010214:ENSRNOT00000013580:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.069
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAAGGCCTTCCAGGTC
R:
TGAAGTCGGCTCCCAGGG
Band lengths:
286-665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]