RnoINT0132678 @ rn6
Intron Retention
Gene
ENSRNOG00000004932 | Sel1l3
Description
SEL1L family member 3 [Source:RGD Symbol;Acc:1562860]
Coordinates
chr14:60189928-60191385:+
Coord C1 exon
chr14:60189928-60190047
Coord A exon
chr14:60190048-60191244
Coord C2 exon
chr14:60191245-60191385
Length
1197 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
AAGTTGCTTTTGTCTTTAAGCAA
3' ss Score
4.26
Exon sequences
Seq C1 exon
GCGTATGTTGAAACTATTAGACTCAAAGATGATGAAATACTCAAGGTCCAAACCAAAGAAGACGGAGATGTCTTTATGTGGCTGAAGCACGAAGCCACCCGCGGCAACGCGGCAGCACAG
Seq A exon
GTGTGCATAAGCCCATGTTGGAGCGTCTGTCAGTGGCTTACAGCAGTACTGCTGTATCTTCCGTTTGCAAGCATGGAGCTTTGCCTCCTTACAGCCAGATGGATGAGGCTTCTCCATGTACTTAGTTCTTTATTCTCAGCCTAAGACATGTTAAATGTTATTATTAGCATATATTAATTGTTATGTGATATGGGTTCATTATATTTTCACACACGTGCATAATGTATTTCAATTTCATTTACCCCTCCCACTATTTCCTCTCCTCTTCCCAACTACTTCAGTGAGAGAGGGGATGGAGAGGGAAAAGAGAGGGGGGAGGAGGGGAAAGGAACAAACCCCACTGAGTTCCATTAGAGTTGTTTACAGGAGCATGCGCACACTGGAGACAGTGTCTCCCTAGCGCTCATCAGCTGTTAGCCCCGCCCCCTTCCATGGTAGCTCTCCCTGCCCCCTTCTATGGTAGCTCTCCCTGCCCCCTTCTATGGTAGATCTCTCTGCCCCCTTCCATGGTAGATCTCTTAATAGATGTCACGTGCAGGTAATCACACCTGCTGTGGCTTCAAGAGTGAAGGTGCAGTGGGAGGACTGGAGCACAGCTCAGTCCTCCAGAGCATTTACTGCTCCTGCAAAGAGCCCAGGCTCAGTTCCCAGCACCCACGTGGCGACTCACAACTGCCTGTAACTCAACTCCGGAGGACCTTGTGCCCTCCTCTGGTCACCAGGGACTCCTGCATGCATGTGGTGCACCCAAACTTTCTTGGGTACACACACATACCCATAAAAATAGTAAGTAAACTTTTTAAAAGTGTACAGTGGCCTGGTGATATGGCTCAGTGGATAAGGTTACTTGTCACCAAGCTTGATGCCTAGGTTATCTGAATTTGATCTCTGAGACTCAACTGGTAGTAAGAACCAACTCCTGGAAGTCTCTCCATACACACGCACACACACACACACACACACACACACACACACACACACACACGAGTGTAACAGCCATGCCGTGCCTAGAACGCTGCCCCCCCCCCCCACTTCTAAAACATTCCCTGAGCCTTCGGAGGTTGATACAGATGTCCTATTTGTGGCCGGTCATTCAGCCCAGAACATTTTACACTAGGCTTCTTCTCCCCTTCCCTCAAGTGTCGTGCAAAACATTACCCAGGAAACTCACTGTTCTAAGTTGCTTTTGTCTTTAAG
Seq C2 exon
CAACGATTGGCTCAGATGCTCTTCTGGGGACAGCAAGGGGTGGCCAAGAACCCTGAGGCTGCTATCGAGTGGTACGCTAAGGGGGCCCTGGAGACTGAGGATCCGGCGCTGATATACGACTATGCCATTGTGTTATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004932:ENSRNOT00000006610:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PU(8.6=7.5)
A:
NA
C2:
PF082387=Sel1=PD(85.7=63.8),PF082387=Sel1=PU(27.3=19.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTATGTTGAAACTATTAGACTCA
R:
TGAATAACACAATGGCATAGTCGT
Band lengths:
259-1456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]