RnoINT0132679 @ rn6
Intron Retention
Gene
ENSRNOG00000004932 | Sel1l3
Description
SEL1L family member 3 [Source:RGD Symbol;Acc:1562860]
Coordinates
chr14:60191245-60195787:+
Coord C1 exon
chr14:60191245-60191385
Coord A exon
chr14:60191386-60195724
Coord C2 exon
chr14:60195725-60195787
Length
4339 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGCTGTTTATCAATGTTTAGGGT
3' ss Score
7.28
Exon sequences
Seq C1 exon
CAACGATTGGCTCAGATGCTCTTCTGGGGACAGCAAGGGGTGGCCAAGAACCCTGAGGCTGCTATCGAGTGGTACGCTAAGGGGGCCCTGGAGACTGAGGATCCGGCGCTGATATACGACTATGCCATTGTGTTATTCAAG
Seq A exon
GTAAGAATTGCTTAATTTGAACTAAATTTTTCGATTCTCATAATAGACATCCTGAGACATTTCCTGTGGGCGTGCAGGCAAACAGAGAGTCTGAGAACAAGTGGCTGACACCAGTGATGGAGAGGGGCGCCCCTGAAAATGAAGAGTCGGAAGCTCTTCCTTGGGCACATCTTTAATTGACAATCTTACGCTTGACACCCGGCTTCTCTATACTTCTGTGACATTCTGAAGGTGACACCCATATATCATGGTTTGGTACTTGGCCCGCCAGCCCCACGGTGCTGCCCGTTTGTCACTGGTTCAACAGAGCGTGTTTAGGCCAGATCTCAACAGTCCCCGTGATGGGGAATAAATGAAGCTGGTTCCAGGCTAAGGAGGAAGGTCAGGGAAGAGCTCAGGAGACAGAGGACAGGTATTAGAATCTGACCTCTGTGACCATGTGGACACCTCTGAAAAGCTTATATATTCTGGGGTGATGCTCAGACTAAATGAAACAGTATTACCAGCTGGCTTTAAGAACTGTAACATGAGTATGTCTTCCACAAGAAAGTCATTGTTCCCACTGATGAATGGAGGACCCTGTGTAACACAAACCACAACAGTGAATTCTCATGGCCTGGGAGATGCTATAGGTCATGTTAGTGTCTTATACGGATATAAAGCATCAGAAGCACCCAGCTGGTCCATTTCGAACCTGGAACAGGGACTCAGGCAGGCTGGCTTTAAAGCCTGTGGTCTGCAGGTCCAAATGCACGTGTATAAAATCAGCAATCCCAGAAAAGTCTCCCATCTGAGTGTGAAGCAGACCTGACCCTGCTTAGCTTCTGAGGTCAGGCTTGAACAGGTGCACTCAGGATGGTATGGCTGCAGACCCAAGCTTGGAAAATGGAGATGCTTTGGCTTTGGTAAGGAAATCCTTGGACCTTACTTACGCCCATGCCCCAAATGAATGTCATCAAATAACCACGTGCCGCCTGTGCGCCTGGCCGGGCCTGCCTCCAGATCCACAGCTGTGGTCACTCACTCACTGACAACCACGATGTTGCTACAGCTCTATCCTCTACGTCCTAAGTGGAGCCTGAAAGCCTATCGGTTGTTATGGTTTCCAAATTGAGGCCTAGACCTTCTCTTTCCAGGCGCCAAATCAACAGAAATTATTTGAATCTTCTCCATATGCCAGTGTGTTTATCTAATACAGATCCATTCTGTGCTGGCCACATGCCAACCTGTGTGCTCGGTGCTCAGTGGAGGGACATATGGAAGCGTGAGTCACATCCCTGGCCTCAGAGGCCTCATACACTGGAGGAGAAGACAGGGCAGGAGTGGGATAGGGCAGAGACACCTGTCCACCGGAGTTGGGGCTGGACACTGGAGAAGGAGGTGTGGTTCAGGCATCGTTTCTGCCCACCAGGATCTGGCAGTGTAGAATGGGATACATTCTGTGTGTGTGCGTCTGCGACTGGATGCTTCCTCGCCTCTCCTTTCCCAGACAGCAATGCTGTCTGTTTTCCCAGTGCTGTTGAATTCTAGCTAAGCTCTCTCTGGGTCGTAAGCAGGAAGCCTTCCTCTCAGGGAAGACTGGTGCCTGGAGCAGGGAGCTCTTTTTAATGTAGTGCACACAGAAGGGCCTTCCAAGGAAATGGGCATTCTGGGCGAAAAGGTGACGATGTGCATTGGCTGGGCAGGTCACCCAAGGTACCACGTGCAATGATGGTGCCTGAACGAGGGTTATGGCGGCCACATGCATCTCATTTGGCATCCCCTGACAGTGGAGCCTTGACTTTGACTCCCTATTTGTCTTCTGTCACTGTATTCAAAGGCTGCTCACCAAGCACCCACTCTGCTGGTGTATGCCATTGGTCTCCCTTAAGAACTTTCGGTGCTGCTCAGACTAGCATATGGTGCTGCAGTCTTTGTGCAAGAAGTTGTGTGATTAAGCTGACTAGAATACTGGATTAGCTAGCAAGGATACCGGAAACATTTCTACCCTAGAAACGGGAATATCTGGATTCAGGGATGTGCTGCAGTTCTGTGAGACTTTGTATAAGTCAACTACTCTGGGCCTGGTTACTTCCTTCAAAATAACTGGGATAGATGAGCCTGGGTTCCATTAGTCTGCAGTTTCTTATTCTTCTTGGGGTCCAAAGTTATCATGTTCCCAATCTAATTCTTCCAAGTGCCCTTCTGTGTTGTCCTTCCTCTTCCTCACTAATTAAATGGTGTAATGGCATTGTCTTAGTTAAAGCTTCTATAGCACCATGACTAAAAGCAAGGTGGGGAGGAAAGGTTTGTTTGACTTACACTTCCACACTGCTGTTCATCATCAGAGAAAGCCAGGACAGGAACTCAGCCGGGTCAGGAGCCTGCAGGCAGGAGCGGATACAAAAGCCATGGAGGAGTGACCTCACTGACTTGTTCCTCATGGCTTGCTCAGCCAGCTTTCTTAAAGAACTCAGGACCACCAGCCCAAGGAGGGCACCGCCCACAATAGGCTGGGCCCTTCCCTGTTGATCACTAATTAAGAAAAAGCCGGATCTTATGGAGGCACGTTTGTGTGTTTGTTTGTTTTTTGTTTTGGGGGGAGTGAATCGAGACAGGGTTTCCTTGTGTAGTCCTGACTGTCCCAGAACTTGCTCTGTAGAAAAGACTGACCTCAAACTCAGAGATCCACCTTCGGCCTCCCGAGTGCTGGGATTAAAGGTGTTGGCAGCACCACCAGGCCAGAGGCATTAGGTTCCCTCCTCTTAGGTGACTTTAGCTCGTGTCAAGTTGGCATAAACTAGCCAGCGCAGGCATACTCGTTGAAAACATTCTCATCCTTACTTTTGCTTTGGTTTCATTAAATGAGTAAGTTAGAGTCCAGTAGACACTTGGATAGAATTCAACCTTTACTTGGATTTCCACTTTTATCGGAGATCCTGTAAACTGTAGGGCTAAGCACACACGGTGTCTTTCCCATTACCATGCAGGAAGTTAGGAGTAATTTTACTTTCTCAGAGTAGAACCAAACTGCATACTAGAAAGTATAGTATGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCACTTGCCTAGGAAGCGCAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAGAACCCCCCCCAAAAAAAGAAAGTATAGTATGGTGGTCAGAGGCTCAGTCTGCTTGCGTGGGTTCGAATCCTGCCTCCCATATTGCCATACCATACAGTTCTGGGAGTCTGAGGTGTATGGGAATGTCAGTGGCTCCCCTGTGGGGTTGGGTGTGGTGATGTGGGTGCTGGCCCATGATCACACTGTATGTTGCTCACCACCTCCAGTTCTTATCGAGCCAACTAAACAGAGTGATATCCCTATTCCTGCAAAGAAAGTCCTCTGCACGGTCACATCATGCAACCCCATTAGTCTTATCTAAGTTGAGGAGGATCCACTGGGGCATTGGGAGAGTGGAAGGGGTCCATGATTATGGATAAATCTGGAGCAACAGAGATTTTCAGTTGTCTCCCCTCAGGGACCCTTTTCTTCTCCACACACCAACCCACCATTTCCCTCACACAGTCCTCTAGATGCCCAAGCTAGGTGCTTTTTGCAACAAGAACTCCAAAGCCTGTTTCTATACATAGAGGATGAGCCATCTTTTCTGGAAATCTCACATTTGCTAGAAGGAAATTTGTCAGCTTCTGCCTCAGACGCAGGCAACTGATTTCTCAGGATCCTAGCTCCTTTTCAGCACACTCTCAAACTGAGTCAGAAGCCCCAGTGTCACCACTGGGGAACCTGAGCCAAGAACCATTGATTGATAAACCGATAACATGTTTTATCTGGGTGTCAGATTAGATAACCCCAGAGGAAAGCACCCAGGGTTGGCCAAATTCATCCAACCTGCTTCACAGCTTCTCCCCCAGCATATGTGAGTGGTCGGGACACAGTTCTTGCCACAATCAATGGAGGTGATTGATGGCTGATGAAGCAGAAAATTGGGGCTCATTGCTGTTCCATATACATGAGCAAGATGATGGAGATGATGATGATGATGATGATGATGATGATGATGATGATGGAGATGGAGATGATGATGGTGGTGATGGAGATGGTGATGATGGAGATGATGATGATGGTGTTGGTGATGATGATGATAACAATGGTATCTTGAAATACTGTGGAGCCTAGAACCACTTAAGACTGTGGAGTTTTTGTTTTGTTTTGTTTTGGTTTTTTTTTAAAGGTTCAGGGTTTATATGTAAGCATTTTATATTGAATGCTGGAGTTTCTGTGTGATGCTTGTGAGGATTCGGGGTTTATTTTTCTCATAATCATTGCTGTTTATCAATGTTTAG
Seq C2 exon
GGTCAAGGAGTTAAAAAGAACAGACGGCTTGCCTTAGAGCTCATGAAGAAAGCTGCTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004932:ENSRNOT00000006610:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(85.7=63.8),PF082387=Sel1=PU(27.3=19.1)
A:
NA
C2:
PF082387=Sel1=FE(60.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]