RnoINT0132702 @ rn6
Intron Retention
Gene
ENSRNOG00000002723 | Sele
Description
selectin E [Source:RGD Symbol;Acc:3654]
Coordinates
chr13:82355886-82356832:+
Coord C1 exon
chr13:82355886-82355969
Coord A exon
chr13:82355970-82356448
Coord C2 exon
chr13:82356449-82356832
Length
479 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TTCTTTCTTACCCAACCCAGTTC
3' ss Score
4.64
Exon sequences
Seq C1 exon
GAAAGTTTCTCCGGTCTAGCATCTGGATGAAAGGAAGTGCTGGGGTCATGAATGCCTCGTGCTTTCTCTCTGCTCTCACCTTTG
Seq A exon
GTAAGCTGGAGTCATCGGAGACCAGGGATCTTTACACTCGCTCACCCCTCTCACTCTTAAGATCAGGGTATTTTGCTGTGTGGGGCTATCCTGGTGGTTAGCAGGACTGATGACCTATCCTTGCAGGGTTCTGCCTTATGGGGGAAGGATGGATCTTAAGCGATCTATTCAGGCGTTGTGAAGGTTCATTCATTTGGTTCTTGAAAGGGGACTCAAACAGGTGTCCCCCAGCATCCACTGAAGTTTGCTTTCTCTGACCTCCATTGTACTGTGAAGTTGGAGTATAACATTGTGGTTGCCATGAGGCACCAGCAGATGTGCAGTCAAACAGTGATCTATAGACATGCTCTCACCTTCAGGTGTTGTTCTTCTTACTTTTAAAATCAATAGTTTGAGCCAACACAAAAGCCTGTAAGTGCCAAAAGCAAGACAACACAATTCAGGACTAAATGTTGTTATTTCTTTCTTACCCAACCCAG
Seq C2 exon
TTCTCCTCATTGGAAAGAGCATAGCTTGGTACTACAATGCCTCCAGTGAGCTCATGACATATGATGAAGCAAGTGCGTATTGTCAACGGGACTACACACATCTGGTGGCGATTCAGAACAAGGAAGAGATCAATTACCTAAACTCCACTCTGAGGTATTCACCAAGTTATTACTGGATTGGAATCAGAAAAGTCAATAATGTATGGATCTGGGTGGGGACCCAGAAGCCTCTGACGGAGGAAGCTAAGAACTGGGCGCCAGGTGAACCAAACAACAAACAAAGAAACGAGGACTGTGTAGAGATCTACATCCAAAGACCCAAAGACTCCGGCATGTGGAATGACGAGAGATGTGACAAAAAGAAACTGGCTCTGTGTTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002723:ENSRNOT00000030677:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=WD(100=86.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCTTTCTCTCTGCTCTCA
R:
CCGGAGTCTTTGGGTCTTTGG
Band lengths:
358-837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]