RnoINT0132703 @ rn6
Intron Retention
Gene
ENSRNOG00000002723 | Sele
Description
selectin E [Source:RGD Symbol;Acc:3654]
Coordinates
chr13:82356449-82357398:+
Coord C1 exon
chr13:82356449-82356832
Coord A exon
chr13:82356833-82357290
Coord C2 exon
chr13:82357291-82357398
Length
458 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
AAGACCTGTGCTTCTTGTAGCTT
3' ss Score
5.54
Exon sequences
Seq C1 exon
TTCTCCTCATTGGAAAGAGCATAGCTTGGTACTACAATGCCTCCAGTGAGCTCATGACATATGATGAAGCAAGTGCGTATTGTCAACGGGACTACACACATCTGGTGGCGATTCAGAACAAGGAAGAGATCAATTACCTAAACTCCACTCTGAGGTATTCACCAAGTTATTACTGGATTGGAATCAGAAAAGTCAATAATGTATGGATCTGGGTGGGGACCCAGAAGCCTCTGACGGAGGAAGCTAAGAACTGGGCGCCAGGTGAACCAAACAACAAACAAAGAAACGAGGACTGTGTAGAGATCTACATCCAAAGACCCAAAGACTCCGGCATGTGGAATGACGAGAGATGTGACAAAAAGAAACTGGCTCTGTGTTACACAG
Seq A exon
GTATGAAATTTCCATGTGGCAGAAGGCCAGTTCTGTGTGGAGGCAGCCTGACAGATTTAGAGTGTGTCAAGTAGTTGATCTCTCTGTGCACATTTTCTGGTTTTTAAATAGATGATTATAAAAGATTTTAATAGTGATTGCATCTCTTTTTACTGATTTGTGCGAGTAAAGGCAAGAACTATACAAATATGTATACTTACATATATCATTGTACCGATATACAGAGTCTATGTACTCACAATGTTTTAGCTATTCTACTGGTATGCCTTTATTACCATCAAAATATACAATAGATGAGCCTGGAACTTGAATCTGGCCTGTCAGTCAAATGTTCGAGCAATAATGTCATTGGTTTTATCTGGATTGCACTGACTCTAAATTAAAAACAAACAAACAAGCAAACCCATGATGAGCACCATGATAGTTGATTCTCTTCATAAGACCTGTGCTTCTTGTAG
Seq C2 exon
CTTCCTGTACCAACACATCCTGCAGTGGTCACGGTGAATGCGTTGAGACCATCAATAGTTATACCTGCAAATGTCACCCCGGCTTCCTGGGACCCAAGTGTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002723:ENSRNOT00000030677:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=WD(100=86.8)
A:
NA
C2:
PF0000822=EGF=WD(100=83.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGACTACACACATCTGGT
R:
TCTCAACGCATTCACCGTGAC
Band lengths:
347-805
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]