RnoINT0132901 @ rn6
Intron Retention
Gene
ENSRNOG00000018952 | Sema3g
Description
semaphorin 3G [Source:RGD Symbol;Acc:1306079]
Coordinates
chr16:7311629-7312237:+
Coord C1 exon
chr16:7311629-7311863
Coord A exon
chr16:7311864-7312106
Coord C2 exon
chr16:7312107-7312237
Length
243 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CAGCCTGGTCCTCTCTACAGAAG
3' ss Score
6.99
Exon sequences
Seq C1 exon
CAAACGCTGTATGTGGGCTCTCCACTGGGCGTGGCCCGGCTGCAGCTGCACCAGTGTGAGACTTATGGCAGTGCCTGCGCTGAGTGCTGCCTGGCCCGGGACCCATACTGTGCTTGGGACGGCACTTCCTGTGCCCGCTACCGCCCCAGCTCGGGCAAGCGCAGGTTCCGACGACAGGACATCCGACATGGCAATCCTGCTGTGCAGTGTCTGGGCCAGGGCCAGAGCCAAGACA
Seq A exon
GTGAGTGGTGGGCCCCCTGGATGTGGGTCACCCTTTGGACTGGGCTCCATCCCTGGGAAGCATGGTCTTGGAGAGGTCCTGTTGTATTAAGTCCCCAGTTTCCCTATGTACAGCTACATTTGGAGTCTTAGGGTGATGTCACCTGAGTCTTCACCACACAGGTATCCTGTGGGAGTTAGTCTGTGGCCCTCAGAGTCTGGGTCCTCTAGTTCCCAAGCTGATCCAGCCTGGTCCTCTCTACAG
Seq C2 exon
AAGCCTCGGGACTGGTGACCAGAGTCTTTGGCACAGAGCACAACAGTACCTTCCTTGAGTGCCGGCCCAAGTCTCCCCAGGCTGCAGTGCGCTGGTTCTTACAAAGGCCAGGGGATAAGGGGGCTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018952:ENSRNOT00000025656:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0143720=PSI=WD(100=78.5)
A:
NA
C2:
PF0143720=PSI=PD(0.1=0.0),PF0004720=ig=PU(48.4=68.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACGCTGTATGTGGGCTCT
R:
CGGCACTCAAGGAAGGTACTG
Band lengths:
299-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]