RnoINT0132910 @ rn6
Intron Retention
Gene
ENSRNOG00000018952 | Sema3g
Description
semaphorin 3G [Source:RGD Symbol;Acc:1306079]
Coordinates
chr16:7308230-7308738:+
Coord C1 exon
chr16:7308230-7308299
Coord A exon
chr16:7308300-7308593
Coord C2 exon
chr16:7308594-7308738
Length
294 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TCCCTGTCTGCCTTTGGCAGTGC
3' ss Score
7.73
Exon sequences
Seq C1 exon
AGGATGTGTTCCTGCTGTGGCCAAAGGCAGGGAAGAACCTCGAGGTGTATGCGCTGTTCAGCACTGTCAG
Seq A exon
GTGGGCATACGTGCTCCCCAGTACCCTGCTACCCCAGCAGGGTCTCTGTACCAGGGTGATTTTTCTGCTGAGCCTCTACTCTTATCCCGCTGACCTTCGGCGGACCTTCTCCTTGATTCGGTCTCCTTGATTTCCGATCTCCATCTCTGTTCTGTCTCCGCCTCTGTGTCCTGTGAGGAAGTCTTGGTTTTCAGCAGCCAGTGTCACCTTCCTCATCACCTATGAAGGCGGCTTGCGACCCCCTTCCCCCAACCACCAGGGCCTAGCCTGACTGTCCCTGTCTGCCTTTGGCAG
Seq C2 exon
TGCTGTGTTCCGGGGCTTTGCTGTCTGTGTGTACCACATGGTAGACATCTGGGAGGTCTTCAACGGGCCCTTCGCTCACCGAGATGGCCCTCAACATCAGTGGGGACCCTATGGGGGCAAGGTGCCCTTCCCCCGGCCTGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018952:ENSRNOT00000025656:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(5.2=100)
A:
NA
C2:
PF0140314=Sema=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCTGCTGTGGCCAAAG
R:
GCACCTTGCCCCCATAGG
Band lengths:
189-483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]