RnoINT0132986 @ rn6
Intron Retention
Gene
ENSRNOG00000014650 | Sema4g
Description
semaphorin 4G [Source:RGD Symbol;Acc:1310436]
Coordinates
chr1:264747753-264748321:+
Coord C1 exon
chr1:264747753-264747975
Coord A exon
chr1:264747976-264748205
Coord C2 exon
chr1:264748206-264748321
Length
230 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
3' ss Seq
CTTTGCCCTTTCTACATCAGCTG
3' ss Score
7.1
Exon sequences
Seq C1 exon
TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCTCAAGACTTGCCATCCCTCGTTCTGGACTTTGTGAAGTTGCACCCACTGATGGCTCGGCCTGTGGTACCCACACGTGGGCGGCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCATACCTGCTGGACCCACCTATGACCTGCTCTTTCTAGGCACAG
Seq A exon
GTGCTTCTGACCCAAATCCCTGATCCTTAATGGCCTTGGTTACTGACGCTTCTGAACTCAGTAGTTCCTGCCACATTGGCTTGGAGTGCCCCGTGTCCTGAGGGACCACTGCTGGTGGCCGGTTCCTTGTCTCTAACCTTATGATTCCTGAGTTGTTCCCATAGGCCTCCTGTCGGGTACTGAGACTGTCGGGTACCACACTGTTCTGACCTTTGCCCTTTCTACATCAG
Seq C2 exon
CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATTATCGAAGAGATACAAGTGTTCAGGGAGTCCCAGTCTGTGGACAATCTAGTTATCTCACCGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014650:ENSRNOT00000019956:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.1=100)
A:
NA
C2:
PF0140314=Sema=FE(8.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCACAGATTCATTGCGCA
R:
TGGGACTCCCTGAACACTTGT
Band lengths:
304-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]