RnoINT0132987 @ rn6
Intron Retention
Gene
ENSRNOG00000014650 | Sema4g
Description
semaphorin 4G [Source:RGD Symbol;Acc:1310436]
Coordinates
chr1:264748206-264748574:+
Coord C1 exon
chr1:264748206-264748321
Coord A exon
chr1:264748322-264748413
Coord C2 exon
chr1:264748414-264748574
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
3' ss Seq
ACTGTCTTCTCTGGTTTCAGCAC
3' ss Score
9.37
Exon sequences
Seq C1 exon
CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATTATCGAAGAGATACAAGTGTTCAGGGAGTCCCAGTCTGTGGACAATCTAGTTATCTCACCGATGCAG
Seq A exon
GTAGTCTGGCCTCAATATGCTAACAGAAAAGGGGACTGGGGAGCTGGGCAGAGACTCAGGGGTTGCTGACCGACTGTCTTCTCTGGTTTCAG
Seq C2 exon
CACAGCCTCTATGTGGGGGCTGCGAGTGGAGTCATCCAGTTTCCTCTGTCCAGTTGCTCACGCTACCGTTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCACCCATGCCTGCATGGTGGCCACCACCATAGCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014650:ENSRNOT00000019956:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.8=100)
A:
NA
C2:
PF0143720=PSI=PU(65.5=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTCTGGGATGCACATTA
R:
GTCATAGCAGGAACGGTAGCG
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]